RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 SERPINB4P48594 390 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 HNRNPH2P55795 449 aaKnown RBP14.85□□□□□ -0.03
CHD3-215ENST00000572750 Q0VFX4 171 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 ASPHQ12797 758 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 MPP2Q14168 576 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 CLEC6AQ6EIG7 209 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 SCIMPQ6UWF3 145 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 CLNKQ7Z7G1 428 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 ZCCHC7Q8N3Z6 543 aaKnown RBP14.85□□□□□ -0.03
CHD3-215ENST00000572750 GALNT16Q8N428 558 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 FDCSPQ8NFU4 85 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 C9orf43Q8TAL5 461 aaPredicted RBP14.85□□□□□ -0.03
CHD3-215ENST00000572750 ADAMTS18Q8TE60 1221 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 ACPTQ9BZG2 426 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 ZNF700Q9H0M5 742 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 ADNPQ9H2P0 1102 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 BRF2Q9HAW0 419 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 TMBIM4Q9HC24 238 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 LYRM4Q9HD34 91 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 MLXIPLQ9NP71 852 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 KCNK9Q9NPC2 374 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 NECTIN3Q9NQS3 549 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 PSD3Q9NYI0 1048 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 KCMF1Q9P0J7 381 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 C19orf25Q9UFG5 118 aaPredicted RBP14.85□□□□□ -0.03
CHD3-215ENST00000572750 TP53TG5Q9Y2B4 290 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 DOCK10Q96BY6 2186 aa14.85□□□□□ -0.03
CHD3-215ENST00000572750 IGKV3D-11A0A0A0MRZ8 115 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 WDR91A4D1P6 747 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 TGFBR3LH3BV60 316 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 CYR61O00622 381 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 PCDH17O14917 1159 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 TM9SF1O15321 606 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 TMPRSS11DO60235 418 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 ULK1O75385 1050 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 ZWINTO95229 277 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 PDGFAP04085 211 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 ITGA3P26006 1051 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 SERPINB3P29508 390 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 MAGOHP61326 146 aaKnown RBP14.84□□□□□ -0.03
CHD3-215ENST00000572750 CSTF3Q12996 717 aaKnown RBP14.84□□□□□ -0.03
CHD3-215ENST00000572750 AIMP2Q13155 320 aaKnown RBP14.84□□□□□ -0.03
CHD3-215ENST00000572750 SLC13A2Q13183 592 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 SLAMF1Q13291 335 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 SFT2D3Q587I9 215 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 CYP20A1Q6UW02 462 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 NDUFAF7Q7L592 441 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 COMMD6Q7Z4G1 85 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 CPEB2Q7Z5Q1 589 aaKnown RBP14.84□□□□□ -0.03
CHD3-215ENST00000572750 CUZD1Q86UP6 607 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 SCUBE1Q8IWY4 988 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 PARP9Q8IXQ6 854 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 ANKRD42Q8N9B4 389 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 TLCD1Q96CP7 247 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 VPS50Q96JG6 964 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 PTCHD1Q96NR3 888 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 SLC25A23Q9BV35 468 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 NUDT9Q9BW91 350 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 ATP13A2Q9NQ11 1180 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 PRDM9Q9NQV7 894 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 ZNF71Q9NQZ8 489 aaPredicted RBP14.84□□□□□ -0.03
CHD3-215ENST00000572750 PRTFDC1Q9NRG1 225 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 RIC8BQ9NVN3 520 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 GPR83Q9NYM4 423 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 TUBD1Q9UJT1 453 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 MRPS33Q9Y291 106 aaKnown RBP14.84□□□□□ -0.03
CHD3-215ENST00000572750 FIS1Q9Y3D6 152 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 MMACHCQ9Y4U1 282 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 CSMD1Q96PZ7 3565 aa14.84□□□□□ -0.03
CHD3-215ENST00000572750 TMEM120BA0PK00 339 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 TMEM233B4DJY2 109 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 NPHS1O60500 1241 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 CEACAM4O75871 244 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 CPN2P22792 545 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 ARRB2P32121 409 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 ARFIP1P53367 373 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 OR4D2P58180 307 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 HMGCS1Q01581 520 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 TNFRSF17Q02223 184 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 GALNT1Q10472 559 aaPredicted RBP14.83□□□□□ -0.04
CHD3-215ENST00000572750 TBL3Q12788 808 aaKnown RBP14.83□□□□□ -0.04
CHD3-215ENST00000572750 RCN2Q14257 317 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 CES4AQ5XG92 561 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 ZNF595Q8IYB9 648 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 METTL4Q8N3J2 472 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 PLPP5Q8NEB5 264 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 AGR3Q8TD06 166 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 SREK1Q8WXA9 508 aaKnown RBP14.83□□□□□ -0.04
CHD3-215ENST00000572750 ARL8AQ96BM9 186 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 CNDP1Q96KN2 507 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 WDR77Q9BQA1 342 aaPredicted RBP14.83□□□□□ -0.04
CHD3-215ENST00000572750 TRMOQ9BU70 441 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 DDX31Q9H8H2 851 aaKnown RBP14.83□□□□□ -0.04
CHD3-215ENST00000572750 PHF11Q9UIL8 331 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 ATG4BQ9Y4P1 393 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 CLDN16Q9Y5I7 305 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 PTGDR2Q9Y5Y4 395 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 SPACA6W5XKT8 324 aa14.83□□□□□ -0.04
CHD3-215ENST00000572750 CELSR2Q9HCU4 2923 aa14.82□□□□□ -0.04
CHD3-215ENST00000572750 MYOCOSA0A1B0GUC4 107 aa14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms