RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 LAMB4A4D0S4 1761 aa3.12□□□□□ -1.91
VPS35-208ENST00000568612 LAMB1P07942 1786 aa3.12□□□□□ -1.91
VPS35-208ENST00000568612 LAMA4Q16363 1823 aa3.12□□□□□ -1.91
VPS35-208ENST00000568612 CNTNAP1P78357 1384 aa3.12□□□□□ -1.91
VPS35-208ENST00000568612 HEG1Q9ULI3 1381 aa3.12□□□□□ -1.91
VPS35-208ENST00000568612 TANC1Q9C0D5 1861 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 USP54Q70EL1 1684 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 ARHGAP23Q9P227 1491 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 COL11A2P13942 1736 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 POLR2AP24928 1970 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 SLIT3O75094 1523 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 TEX13CA0A0J9YWL9 993 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 A0A1W2PN81 502 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 A0A1W2PPC1 479 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 RPS10-NUDT3A0A1W2PQS6 291 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 DENND3A2RUS2 1198 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 MANSC4A6NHS7 340 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 RHPN2P1A8MT19 583 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PDZK1P1A8MUH7 402 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 MPTX1A8MV57 137 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 TMEM233B4DJY2 109 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 E5RI56 91 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 FAM227AF5H4B4 570 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 H7C1Q1 480 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 SMIM22K7EJ46 135 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 M0R3H8 397 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 TO15178 435 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PSMD3O43242 534 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 SLC25A17O43808 307 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PRKYO43930 277 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 DFNA5O60443 496 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 CTAG2O75638 210 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 UGT2B17O75795 530 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 EIF3GO75821 320 aaKnown RBP eCLIP3.11□□□□□ -1.91
VPS35-208ENST00000568612 UPK1BO75841 260 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 C1QL1O75973 258 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 CNTN5O94779 1100 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 TSPAN12O95859 305 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 CSTAP01040 98 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PCCAP05165 728 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 ENO1P06733 434 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 ADRB2P07550 413 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 HCKP08631 526 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 ANXA5P08758 320 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 ZNF806P0C7X5 589 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 STAG3L3P0CL85 134 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 OR8G3PP0DMU2 310 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 ERVK-10P10266 1014 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 RRASP10301 218 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 CYP2D6P10635 497 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 MCF2P10911 925 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 UMPSP11172 480 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 CKMT1AP12532 417 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 RNH1P13489 461 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 PHKG2P15735 406 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 MUC1P15941 1255 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 XRCC1P18887 633 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 KCNA5P22460 613 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 AHCYP23526 432 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PAX6P26367 422 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 ADORA2AP29274 412 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 EEF1DP29692 281 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 CDC25AP30304 524 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PPIFP30405 207 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 CCR7P32248 378 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 EPHX2P34913 555 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 CHRNA7P36544 502 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 LIPAP38571 399 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 FEN1P39748 380 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 PIK3CBP42338 1070 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 RPS5P46782 204 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 OMPP47874 163 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 SLC1A6P48664 564 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 GPR143P51810 404 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 AGFG1P52594 562 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 SLC18A1P54219 525 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 UGT2B15P54855 530 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 CDH8P55286 799 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 PKNOX1P55347 436 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 SUMO3P55854 103 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 KCNK10P57789 538 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 ABCE1P61221 599 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 NUTF2P61970 127 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 IFI35P80217 286 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 HTRA4P83105 476 aaPredicted RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 ARF5P84085 180 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 FGL1Q08830 312 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 GAGE1Q13065 139 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 BTN1A1Q13410 526 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 CAMK2DQ13557 499 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 GRAPQ13588 217 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 SNTB1Q13884 538 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 CCNIQ14094 377 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 TFDP2Q14188 446 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 NECTIN1Q15223 517 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 KRT31Q15323 416 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 CNN3Q15417 329 aaKnown RBP3.11□□□□□ -1.91
VPS35-208ENST00000568612 CALCRLQ16602 461 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 SYT16Q17RD7 645 aa3.11□□□□□ -1.91
VPS35-208ENST00000568612 HFEQ30201 348 aa3.11□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms