RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 SSR2P43308 183 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 TSFMP43897 325 aaKnown RBP14.06□□□□□ -0.16
VPS39-210ENST00000568357 VSNL1P62760 191 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 SLAMF1Q13291 335 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 FAM219BQ5XKK7 198 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 MILR1Q7Z6M3 343 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 LCA5Q86VQ0 697 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 CRLF3Q8IUI8 442 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 BEST3Q8N1M1 668 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 OR4F6Q8NGB9 312 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 ADAMTS18Q8TE60 1221 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 REPS1Q96D71 796 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 ZNF354BQ96LW1 612 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 ZNF717Q9BY31 904 aaPredicted RBP14.06□□□□□ -0.16
VPS39-210ENST00000568357 RNF32Q9H0A6 362 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 PNO1Q9NRX1 252 aaKnown RBP14.06□□□□□ -0.16
VPS39-210ENST00000568357 PSD3Q9NYI0 1048 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 TEKT2Q9UIF3 430 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 FBXW2Q9UKT8 454 aa14.06□□□□□ -0.16
VPS39-210ENST00000568357 MRPS33Q9Y291 106 aaKnown RBP14.06□□□□□ -0.16
VPS39-210ENST00000568357 SMIM23A6NLE4 172 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 FOXE1O00358 373 aaPredicted RBP14.05□□□□□ -0.16
VPS39-210ENST00000568357 EEDO75530 441 aaKnown RBP14.05□□□□□ -0.16
VPS39-210ENST00000568357 MYO1DO94832 1006 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 RNF224P0DH78 156 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 TAC1P20366 129 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 BSGP35613 385 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 HSD17B3P37058 310 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 GPR143P51810 404 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 RAP1GDS1P52306 607 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 HERVK_113P63132 956 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 CUL3Q13618 768 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 RCN2Q14257 317 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 UNC50Q53HI1 259 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 TDRPQ86YL5 185 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 EPS8L3Q8TE67 593 aaKnown RBP14.05□□□□□ -0.16
VPS39-210ENST00000568357 ERVK-6Q9BXR3 956 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 ALOXE3Q9BYJ1 711 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP14.05□□□□□ -0.16
VPS39-210ENST00000568357 CDCP1Q9H5V8 836 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 DCDC2Q9UHG0 476 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 ZNF225Q9UK10 706 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 EMCNQ9ULC0 261 aa14.05□□□□□ -0.16
VPS39-210ENST00000568357 DOPEY1Q5JWR5 2465 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 TRAV17A0A0B4J275 112 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 OR5H15A6NDH6 313 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 LDB3O75112 727 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 CBX6O95503 412 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 GSTA1P08263 222 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 POU3F2P20265 443 aaPredicted RBP14.04□□□□□ -0.16
VPS39-210ENST00000568357 IMPDH1P20839 514 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 CPN2P22792 545 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 CD96P40200 585 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 ARFIP1P53367 373 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 PHEXP78562 749 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 ID2Q02363 134 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 CLCQ05315 142 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 MRPL49Q13405 166 aaKnown RBP14.04□□□□□ -0.16
VPS39-210ENST00000568357 MEP1AQ16819 746 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 GGTA1PQ4G0N0 100 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 SGO1Q5FBB7 561 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 ZNF678Q5SXM1 525 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 FRG2Q64ET8 278 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 ZNF787Q6DD87 383 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 RPUSD3Q6P087 351 aaKnown RBP14.04□□□□□ -0.16
VPS39-210ENST00000568357 LETMD1Q6P1Q0 360 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 RPS19BP1Q86WX3 136 aaKnown RBP14.04□□□□□ -0.16
VPS39-210ENST00000568357 ZCCHC7Q8N3Z6 543 aaKnown RBP14.04□□□□□ -0.16
VPS39-210ENST00000568357 SLC5A8Q8N695 610 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 APCDD1LQ8NCL9 501 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 B3GNT7Q8NFL0 401 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 GRHL3Q8TE85 626 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 TRPC4APQ8TEL6 797 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 ANKRD9Q96BM1 317 aaPredicted RBP14.04□□□□□ -0.16
VPS39-210ENST00000568357 TMEM237Q96Q45 408 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 FRG2BQ96QU4 278 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 CENPKQ9BS16 269 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 DDX31Q9H8H2 851 aaKnown RBP14.04□□□□□ -0.16
VPS39-210ENST00000568357 FARSBQ9NSD9 589 aaKnown RBP14.04□□□□□ -0.16
VPS39-210ENST00000568357 ANKRD10Q9NXR5 420 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 VTI1BQ9UEU0 232 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.04□□□□□ -0.16
VPS39-210ENST00000568357 ZNF223Q9UK11 482 aaPredicted RBP14.04□□□□□ -0.16
VPS39-210ENST00000568357 PPIEQ9UNP9 301 aaKnown RBP14.04□□□□□ -0.16
VPS39-210ENST00000568357 ATG4BQ9Y4P1 393 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 V9GYY5 206 aaPredicted RBP14.04□□□□□ -0.16
VPS39-210ENST00000568357 CSMD1Q96PZ7 3565 aa14.04□□□□□ -0.16
VPS39-210ENST00000568357 A0A0A6YYD5 115 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 WASHC1A8K0Z3 465 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 TMPRSS11DO60235 418 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 SUPT7LO94864 414 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 AGFG2O95081 481 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 SLU7O95391 586 aaKnown RBP14.03□□□□□ -0.16
VPS39-210ENST00000568357 OTCP00480 354 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 ATP5F1P24539 256 aaPredicted RBP14.03□□□□□ -0.16
VPS39-210ENST00000568357 PRKAA2P54646 552 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 HNRNPH2P55795 449 aaKnown RBP14.03□□□□□ -0.16
VPS39-210ENST00000568357 TAS2R50P59544 299 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 STX4Q12846 297 aa14.03□□□□□ -0.16
VPS39-210ENST00000568357 TUBA3CQ13748 450 aa14.03□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms