RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 STX4Q12846 297 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 CHIT1Q13231 466 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 DOC2AQ14183 400 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 TRADDQ15628 312 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 AP5B1Q2VPB7 878 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 C18orf21Q32NC0 220 aaPredicted RBP6.87□□□□□ -1.31
SCFD1-222ENST00000556768 TMEM35AQ53FP2 167 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 ZNF766Q5HY98 468 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 H3F3CQ6NXT2 135 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 MED27Q6P2C8 311 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 ZDHHC24Q6UX98 284 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 CMC1Q7Z7K0 106 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 ZNF595Q8IYB9 648 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 LGI4Q8N135 537 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 KIF18AQ8NI77 898 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 RHEBL1Q8TAI7 183 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 NR4A3Q92570 626 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 TSLPQ969D9 159 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 ESAMQ96AP7 390 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 REPS1Q96D71 796 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 MS4A6EQ96DS6 147 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 SERINC2Q96SA4 455 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 FMO2Q99518 471 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 CCDC77Q9BR77 488 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 TBCDQ9BTW9 1192 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 LRFN1Q9P244 771 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 COPG2Q9UBF2 871 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 PLEKHB1Q9UF11 243 aaPredicted RBP6.87□□□□□ -1.31
SCFD1-222ENST00000556768 CLCA3PQ9Y6N3 262 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 NAV2Q8IVL1 2488 aa6.87□□□□□ -1.31
SCFD1-222ENST00000556768 SPTBN1Q01082 2364 aaKnown RBP6.86□□□□□ -1.31
SCFD1-222ENST00000556768 A0A096LPK6 155 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 TCRBV16S1A1N1A0A5B0 115 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 GABRR3A8MPY1 467 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 FAM227AF5H4B4 570 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 MYO1DO94832 1006 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 C2P06681 752 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 SMIM10L1P0DMW3 83 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 PCNAP12004 261 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 TNNI3P19429 210 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 MAOAP21397 527 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 TLX1P31314 330 aaPredicted RBP6.86□□□□□ -1.31
SCFD1-222ENST00000556768 CASP2P42575 452 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 MSH2P43246 934 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 SERPINB8P50452 374 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 SERPINB9P50453 376 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 CLCN2P51788 898 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 SNRPNP63162 240 aaKnown RBP6.86□□□□□ -1.31
SCFD1-222ENST00000556768 BTG2P78543 158 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 PCDH1Q08174 1060 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 TERF2Q15554 542 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 OR1C1Q15619 314 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 MAPKAPK3Q16644 382 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 PFKFB4Q16877 469 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 KRTCAP3Q53RY4 240 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 FBXO48Q5FWF7 155 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 FCRLBQ6BAA4 426 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 GFRALQ6UXV0 394 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 CRLF3Q8IUI8 442 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 CNPY4Q8N129 248 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 BEST3Q8N1M1 668 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 CA13Q8N1Q1 262 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 TMEM132CQ8N3T6 1108 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 DAZLQ92904 295 aaKnown RBP6.86□□□□□ -1.31
SCFD1-222ENST00000556768 ATP6V1E2Q96A05 226 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 NXNL1Q96CM4 212 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 WDR34Q96EX3 536 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 CMTM7Q96FZ5 175 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 SMIM10Q96HG1 83 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 TM9SF2Q99805 663 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 SLX1AQ9BQ83 275 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 TMEM79Q9BSE2 394 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 CDCP1Q9H5V8 836 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 ACTR8Q9H981 624 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 KLHL1Q9NR64 748 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 PRTFDC1Q9NRG1 225 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 PNO1Q9NRX1 252 aaKnown RBP6.86□□□□□ -1.31
SCFD1-222ENST00000556768 MS4A12Q9NXJ0 267 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 ANKRD10Q9NXR5 420 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 SEC14L3Q9UDX4 400 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 ERRFI1Q9UJM3 462 aaPredicted RBP6.86□□□□□ -1.31
SCFD1-222ENST00000556768 NTNG1Q9Y2I2 539 aa6.86□□□□□ -1.31
SCFD1-222ENST00000556768 A0A0G2JN53 185 aa6.85□□□□□ -1.31
SCFD1-222ENST00000556768 SAGE2PA6NJ88 616 aa6.85□□□□□ -1.31
SCFD1-222ENST00000556768 A8MUA0 341 aa6.85□□□□□ -1.31
SCFD1-222ENST00000556768 UBXN8O00124 270 aa6.85□□□□□ -1.31
SCFD1-222ENST00000556768 UNC5CO95185 931 aa6.85□□□□□ -1.31
SCFD1-222ENST00000556768 KLHL2O95198 593 aa6.85□□□□□ -1.31
SCFD1-222ENST00000556768 WISP3O95389 354 aaPredicted RBP6.85□□□□□ -1.31
SCFD1-222ENST00000556768 ACSL3O95573 720 aa6.85□□□□□ -1.31
SCFD1-222ENST00000556768 RBP1P09455 135 aa6.85□□□□□ -1.31
SCFD1-222ENST00000556768 COX7A2P14406 83 aa6.85□□□□□ -1.31
SCFD1-222ENST00000556768 PTX3P26022 381 aaPredicted RBP6.85□□□□□ -1.31
SCFD1-222ENST00000556768 CNTFP26441 200 aa6.85□□□□□ -1.31
SCFD1-222ENST00000556768 HNRNPH1P31943 449 aaKnown RBP6.85□□□□□ -1.31
SCFD1-222ENST00000556768 CD96P40200 585 aa6.85□□□□□ -1.31
SCFD1-222ENST00000556768 RAP1GDS1P52306 607 aa6.85□□□□□ -1.31
SCFD1-222ENST00000556768 ALDH18A1P54886 795 aaKnown RBP6.85□□□□□ -1.31
SCFD1-222ENST00000556768 RAB38P57729 211 aa6.85□□□□□ -1.31
SCFD1-222ENST00000556768 BIKQ13323 160 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms