RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 TPM3P06753 285 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 PIK3R1P27986 724 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 STIP1P31948 543 aaKnown RBP4.03□□□□□ -1.76
PRPF39-209ENST00000556353 PTGER4P35408 488 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 MTHFRP42898 656 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 ALDH3A2P51648 485 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 ZNF75DP51815 510 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 ACLYP53396 1101 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 MYL7Q01449 175 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 EPS8Q12929 822 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 TAB1Q15750 504 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 SNAPC1Q16533 368 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 SPECC1Q5M775 1068 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 ARMCX2Q7L311 632 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 NUP54Q7Z3B4 507 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 ZNF589Q86UQ0 364 aaPredicted RBP4.03□□□□□ -1.76
PRPF39-209ENST00000556353 HPS6Q86YV9 775 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 TAGAPQ8N103 731 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 MINDY1Q8N5J2 469 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 FAM133AQ8N9E0 248 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 GMCL1P1Q8NEA9 526 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 VMP1Q96GC9 406 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 ATXN7L3BQ96GX2 97 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 LGMNQ99538 433 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 CDX2Q99626 313 aaPredicted RBP4.03□□□□□ -1.76
PRPF39-209ENST00000556353 MRPL1Q9BYD6 325 aaKnown RBP4.03□□□□□ -1.76
PRPF39-209ENST00000556353 GHITMQ9H3K2 345 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 TLE6Q9H808 572 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 RAVER2Q9HCJ3 691 aaKnown RBP4.03□□□□□ -1.76
PRPF39-209ENST00000556353 NYAP2Q9P242 653 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 CGNQ9P2M7 1197 aaKnown RBP4.03□□□□□ -1.76
PRPF39-209ENST00000556353 PCSK1NQ9UHG2 260 aa4.03□□□□□ -1.76
PRPF39-209ENST00000556353 ZFHX2Q9C0A1 2572 aaPredicted RBP4.03□□□□□ -1.77
PRPF39-209ENST00000556353 TECTAO75443 2155 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 A0A087WUV0 522 aaPredicted RBP4.02□□□□□ -1.77
PRPF39-209ENST00000556353 A0A1W2PNU3 283 aaPredicted RBP4.02□□□□□ -1.77
PRPF39-209ENST00000556353 A8MXK9 166 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 KBTBD13C9JR72 458 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 ERAL1O75616 437 aaKnown RBP4.02□□□□□ -1.77
PRPF39-209ENST00000556353 CEACAM4O75871 244 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 SLC25A27O95847 323 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 SKILP12757 684 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 GP1BBP13224 206 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 PFKFB1P16118 471 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 MX1P20591 662 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 PDHA2P29803 388 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 KIF5BP33176 963 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 CAPGP40121 348 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 MAPK12P53778 367 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 SH3BGRP55822 239 aaPredicted RBP4.02□□□□□ -1.77
PRPF39-209ENST00000556353 BEX3Q00994 111 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 SMC1AQ14683 1233 aaKnown RBP4.02□□□□□ -1.77
PRPF39-209ENST00000556353 WTAPQ15007 396 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 MCMDC2Q4G0Z9 681 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 CBWD6Q4V339 395 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 CBWD3Q5JTY5 395 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 MFSD12Q6NUT3 480 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 GDPGP1Q6ZNW5 385 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 CHMP1BQ7LBR1 199 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 ANKRD33Q7Z3H0 272 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 ZER1Q7Z7L7 766 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 TBC1D10CQ8IV04 446 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 LINC00346Q8IVM7 164 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 FBXO16Q8IX29 292 aaPredicted RBP4.02□□□□□ -1.77
PRPF39-209ENST00000556353 ABHD12Q8N2K0 398 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 OR7A2PQ8NGA2 310 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 OR4K1Q8NGD4 311 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 OR5T2Q8NGG2 359 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 ZPLD1Q8TCW7 415 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 CHPT1Q8WUD6 406 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 PRPF31Q8WWY3 499 aaKnown RBP4.02□□□□□ -1.77
PRPF39-209ENST00000556353 JAKMIP2Q96AA8 810 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 SLC22A18Q96BI1 424 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 NXNL1Q96CM4 212 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 CALML4Q96GE6 196 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 PDLIM5Q96HC4 596 aaKnown RBP4.02□□□□□ -1.77
PRPF39-209ENST00000556353 ZNF396Q96N95 335 aaPredicted RBP4.02□□□□□ -1.77
PRPF39-209ENST00000556353 GNB4Q9HAV0 340 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 SH3GLB2Q9NR46 395 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 VPS28Q9UK41 221 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 RABL2BQ9UNT1 228 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 ZNF510Q9Y2H8 683 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 PLXNA4Q9HCM2 1894 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 LAMA1P25391 3075 aa4.02□□□□□ -1.77
PRPF39-209ENST00000556353 CACNA1AO00555 2505 aa4.01□□□□□ -1.77
PRPF39-209ENST00000556353 NEDD4P46934 1319 aa4.01□□□□□ -1.77
PRPF39-209ENST00000556353 TTC41PQ6P2S7 1318 aa4.01□□□□□ -1.77
PRPF39-209ENST00000556353 MYO10Q9HD67 2058 aa4.01□□□□□ -1.77
PRPF39-209ENST00000556353 CEP250Q9BV73 2442 aa4.01□□□□□ -1.77
PRPF39-209ENST00000556353 FAM186AA6NE01 2351 aa4.01□□□□□ -1.77
PRPF39-209ENST00000556353 ERICH4A6NGS2 130 aa4.01□□□□□ -1.77
PRPF39-209ENST00000556353 DUSP11O75319 330 aaKnown RBP4.01□□□□□ -1.77
PRPF39-209ENST00000556353 E2F6O75461 281 aa4.01□□□□□ -1.77
PRPF39-209ENST00000556353 KRT33AO76009 404 aa4.01□□□□□ -1.77
PRPF39-209ENST00000556353 IGKV3-15P01624 115 aa4.01□□□□□ -1.77
PRPF39-209ENST00000556353 ASGR1P07306 291 aa4.01□□□□□ -1.77
PRPF39-209ENST00000556353 IRF2P14316 349 aa4.01□□□□□ -1.77
PRPF39-209ENST00000556353 MPZP25189 248 aa4.01□□□□□ -1.77
PRPF39-209ENST00000556353 OAS2P29728 719 aaKnown RBP4.01□□□□□ -1.77
PRPF39-209ENST00000556353 OXTRP30559 389 aa4.01□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms