RNA–Protein interactions for RNA: ENST00000553619.1

VTI1B-202, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 574 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-202ENST00000553619 FEZF1A0PJY2 475 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 CPED1A4D0V7 1026 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 OR2A25A4D2G3 310 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 TLCD2A6NGC4 264 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 PATE3B3GLJ2 98 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 TMEM233B4DJY2 109 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 E9PBE3 544 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 TMX2-CTNND1H3BSU7 103 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 PSMD12O00232 456 aaPredicted RBP4.77□□□□□ -1.65
VTI1B-202ENST00000553619 AGRPO00253 132 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 FCHO1O14526 889 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 LSM1O15116 133 aaKnown RBP4.77□□□□□ -1.65
VTI1B-202ENST00000553619 KLHL41O60662 606 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 SLC22A3O75751 556 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 ATP6AP2O75787 350 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 SEMA3DO95025 777 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 ZBTB11O95625 1053 aaPredicted RBP4.77□□□□□ -1.65
VTI1B-202ENST00000553619 SERPIND1P05546 499 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 SLC35G6P0C7Q6 338 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 PRR35P0CG20 571 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 GIMD1P0DJR0 217 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 CDK4P11802 303 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 CKMT1AP12532 417 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 CKMT2P17540 419 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 TYRP1P17643 537 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 CALB2P22676 271 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 PSMB5P28074 263 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 CAPZBP47756 277 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 MRPL19P49406 292 aaKnown RBP4.77□□□□□ -1.65
VTI1B-202ENST00000553619 ACADVLP49748 655 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 NEK2P51955 445 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 CLNS1AP54105 237 aaKnown RBP4.77□□□□□ -1.65
VTI1B-202ENST00000553619 KCNK10P57789 538 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 RPS13P62277 151 aaKnown RBP4.77□□□□□ -1.65
VTI1B-202ENST00000553619 TRA2BP62995 288 aaKnown RBP4.77□□□□□ -1.65
VTI1B-202ENST00000553619 E2F1Q01094 437 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 PLP2Q04941 152 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 LRRC74AQ0VAA2 488 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 KLF10Q13118 480 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 TUBB3Q13509 450 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 DDX39BQ13838 428 aaKnown RBP4.77□□□□□ -1.65
VTI1B-202ENST00000553619 CYLC2Q14093 348 aaPredicted RBP4.77□□□□□ -1.65
VTI1B-202ENST00000553619 HERC3Q15034 1050 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 SHBQ15464 509 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 CSRP2Q16527 193 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 FAM214AQ32MH5 1076 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 MMEL1Q495T6 779 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 PDCD4Q53EL6 469 aaKnown RBP4.77□□□□□ -1.65
VTI1B-202ENST00000553619 TCTE1Q5JU00 501 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 VWA5B1Q5TIE3 1220 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 IL23RQ5VWK5 629 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 KHDRBS2Q5VWX1 349 aaKnown RBP4.77□□□□□ -1.65
VTI1B-202ENST00000553619 ZNF425Q6IV72 752 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 IRGCQ6NXR0 463 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 FBXO42Q6P3S6 717 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 TRIM40Q6P9F5 258 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 C6orf89Q6UWU4 347 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 ABHD13Q7L211 337 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 R3HCC1LQ7Z5L2 792 aaKnown RBP4.77□□□□□ -1.65
VTI1B-202ENST00000553619 CLNKQ7Z7G1 428 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 B3GNT8Q7Z7M8 397 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 PAQR7Q86WK9 346 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 GATAD2AQ86YP4 633 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 SLC35F3Q8IY50 421 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 METTL4Q8N3J2 472 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 FITM2Q8N6M3 262 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 DCBLD1Q8N8Z6 715 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 KYQ8NBH2 561 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 SUMF1Q8NBK3 374 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 PCYOX1LQ8NBM8 494 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 VPS37AQ8NEZ2 397 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 NT5CQ8TCD5 201 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 CHTF18Q8WVB6 975 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 SLC13A3Q8WWT9 602 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 RSC1A1Q92681 617 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 ERP27Q96DN0 273 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 C3orf30Q96M34 536 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 CATSPER2Q96P56 530 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 TRAPPC9Q96Q05 1148 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 OR52B2Q96RD2 323 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 MTERF1Q99551 399 aaKnown RBP4.77□□□□□ -1.65
VTI1B-202ENST00000553619 CDC6Q99741 560 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 ZFYVE21Q9BQ24 234 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 CCDC3Q9BQI4 270 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 TBCDQ9BTW9 1192 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 CCDC106Q9BWC9 280 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 ACPTQ9BZG2 426 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 DPY30Q9C005 99 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 ABCG4Q9H172 646 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 MYLK2Q9H1R3 596 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 LRRN3Q9H3W5 708 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 TUBB1Q9H4B7 451 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 EFCAB1Q9HAE3 211 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 CLK4Q9HAZ1 481 aaKnown RBP4.77□□□□□ -1.65
VTI1B-202ENST00000553619 FANCEQ9HB96 536 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 TMEM9BQ9NQ34 198 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 SPHK1Q9NYA1 384 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 NTMQ9P121 344 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 TAGLN3Q9UI15 199 aa4.77□□□□□ -1.65
VTI1B-202ENST00000553619 MCM8Q9UJA3 840 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms