RNA–Protein interactions for RNA: ENST00000551981.5

CHMP1A-210, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 2

Gene CHMP1A, Length 689 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-210ENST00000551981 HNMTP50135 292 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 HNRNPFP52597 415 aaKnown RBP13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 EFTUD2Q15029 972 aaKnown RBP eCLIP13.13□□□□□ -0.311e-6■■■■□ 22.2
CHMP1A-210ENST00000551981 SPANXN3Q5MJ09 141 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 TRIM40Q6P9F5 258 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 SBSNQ6UWP8 590 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 TMIGD1Q6UXZ0 262 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 GALNT7Q86SF2 657 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 PPIL6Q8IXY8 311 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 KLHDC8AQ8IYD2 350 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 SPC24Q8NBT2 197 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 TMEM52Q8NDY8 209 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 TRIM58Q8NG06 486 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 SREK1Q8WXA9 508 aaKnown RBP13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 KIAA1191Q96A73 305 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 MS4A6EQ96DS6 147 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 PDLIM5Q96HC4 596 aaKnown RBP13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 EGFL8Q99944 293 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 NAT9Q9BTE0 207 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 OR8D2Q9GZM6 311 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 RBSNQ9H1K0 784 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 COPS7BQ9H9Q2 264 aaPredicted RBP13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 PPANQ9NQ55 473 aaKnown RBP13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 DLL4Q9NR61 685 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 CRIM1Q9NZV1 1036 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 VWA7Q9Y334 891 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 CLDN16Q9Y5I7 305 aa13.13□□□□□ -0.31
CHMP1A-210ENST00000551981 TRGV5A0A0B4J1U4 118 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 LRIT2A6NDA9 550 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 A6NNC1 897 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 HSPB2A8KAH6 182 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 SYT5O00445 386 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 CTNSO60931 367 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 CELA3AP09093 270 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 C1GALT1C1LP0DN25 315 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 TNNI3P19429 210 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 HNRNPH1P31943 449 aaKnown RBP13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 DNASE1L1P49184 302 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 RNF4P78317 190 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 FOXO1Q12778 655 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 HSPB2Q16082 182 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 PPP1R3AQ16821 1122 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 FLYWCH1Q4VC44 716 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 FAM45BPQ6NSW5 357 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 CCDC137Q6PK04 289 aaKnown RBP13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 CDC20BQ86Y33 519 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 KRT78Q8N1N4 520 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 FBXW8Q8N3Y1 598 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 FAM45AQ8TCE6 357 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 FAM222BQ8WU58 562 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 PTPMT1Q8WUK0 201 aaPredicted RBP13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 SLCO2A1Q92959 643 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 MBD6Q96DN6 1003 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 CERS2Q96G23 380 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 SERINC2Q96SA4 455 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 ALOXE3Q9BYJ1 711 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 GSX1Q9H4S2 264 aaPredicted RBP13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 TUBA8Q9NY65 449 aaPredicted RBP13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 COPS7AQ9UBW8 275 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 VTI1BQ9UEU0 232 aa13.12□□□□□ -0.31
CHMP1A-210ENST00000551981 ANKDD1BA6NHY2 528 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 C17orf105B2RV13 164 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 DVL2O14641 736 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 CLEC3AO75596 197 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 CCL3P10147 92 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 CDC25BP30305 580 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 ASCL1P50553 236 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 PLA2G16P53816 162 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 MTTPP55157 894 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 LIM2P55344 173 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 CDKL1Q00532 357 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 TGM3Q08188 693 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 TBL3Q12788 808 aaKnown RBP13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 SNTB1Q13884 538 aaKnown RBP13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 SERTAD2Q14140 314 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 SLBPQ14493 270 aaKnown RBP eCLIP13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 FBXW10Q5XX13 1052 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 PAMR1Q6UXH9 720 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 FRA10AC1Q70Z53 315 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 BIVMQ86UB2 503 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 C7orf57Q8NEG2 295 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 OR2L5Q8NG80 312 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 SLC2A12Q8TD20 617 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 GRK7Q8WTQ7 553 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 ANKRD7Q92527 254 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 QRFPRQ96P65 431 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 CNPPD1Q9BV87 410 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 PITHD1Q9GZP4 211 aaPredicted RBP13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 REXO4Q9GZR2 422 aaKnown RBP13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 BOKQ9UMX3 212 aaPredicted RBP13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 DAPP1Q9UN19 280 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 RPH3AQ9Y2J0 694 aaPredicted RBP13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 ATG4BQ9Y4P1 393 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 PCDHGB3Q9Y5G1 929 aa13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.11□□□□□ -0.31
CHMP1A-210ENST00000551981 NPEPPSL1A6NEC2 478 aa13.1□□□□□ -0.31
CHMP1A-210ENST00000551981 CYR61O00622 381 aa13.1□□□□□ -0.31
CHMP1A-210ENST00000551981 WDR47O94967 919 aa13.1□□□□□ -0.31
CHMP1A-210ENST00000551981 RAF1P04049 648 aa13.1□□□□□ -0.31
CHMP1A-210ENST00000551981 COX7A2P14406 83 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms