RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 LGI4Q8N135 537 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 ZNF513Q8N8E2 541 aaPredicted RBP17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 OR5P2Q8WZ92 322 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 EZH1Q92800 747 aaPredicted RBP17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 DNASE1L2Q92874 299 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 NEURL3Q96EH8 262 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 PDXPQ96GD0 296 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 XKR8Q9H6D3 395 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 NT5DC2Q9H857 520 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 ACER3Q9NUN7 267 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 TEX10Q9NXF1 929 aaPredicted RBP17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 PLEKHM1Q9Y4G2 1056 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 SNX11Q9Y5W9 270 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 PRR23AA6NEV1 266 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 PCDH17O14917 1159 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 NDUFS4O43181 175 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 B4GALT2O60909 372 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 ADH1BP00325 375 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 IFNA14P01570 189 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 ITGA2P17301 1181 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 GGT2P36268 569 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 SOX9P48436 509 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 PCBP4P57723 403 aaKnown RBP17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 DMPKQ09013 629 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 HEPACAMQ14CZ8 416 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 MOGQ16653 247 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 ZNF829Q3KNS6 432 aaPredicted RBP17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 TNFAIP8L2Q6P589 184 aaPredicted RBP17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 ARMC8Q8IUR7 673 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 OR9Q2Q8NGE9 314 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 SIGLEC11Q96RL6 698 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 ACOT13Q9NPJ3 140 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 SIRT3Q9NTG7 399 aaPredicted RBP17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 KCNK6Q9Y257 313 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 WBP11Q9Y2W2 641 aaKnown RBP17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 PCDHGA2Q9Y5H1 932 aa17.63■□□□□ 0.41
PRPF40B-208ENST00000548436 A0A0G2JN53 185 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 TRBC2A0A5B9 178 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 GPR89AB7ZAQ6 455 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 PPM1DO15297 605 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 GPR89BP0CG08 455 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 ANXA8P13928 327 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 FRKP42685 505 aaPredicted RBP17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 PXNP49023 591 aaPredicted RBP17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 BMXP51813 675 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 HSPB3Q12988 150 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 CLCA4Q14CN2 919 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 SYT6Q5T7P8 510 aaPredicted RBP17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 KIAA1161Q6NSJ0 714 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 REEP3Q6NUK4 255 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 AHSA2Q719I0 299 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 PRSS48Q7RTY5 328 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 ZNF605Q86T29 641 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 SLC38A5Q8WUX1 472 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 EXOSC8Q96B26 276 aaKnown RBP17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 RGMAQ96B86 450 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 YIPF6Q96EC8 236 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 CAMK1GQ96NX5 476 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 MYADMQ96S97 322 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 PIP5K1AQ99755 562 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 RSPO3Q9BXY4 272 aaPredicted RBP17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 AICDAQ9GZX7 198 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 MDC1Q14676 2089 aaKnown RBP17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 SH3PXD2BA1X283 911 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 CLPXO76031 633 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 GABARAPO95166 117 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 SERPINB1P30740 379 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 GDI1P31150 447 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 LIMS1P48059 325 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 SEC13P55735 322 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 GANABQ14697 944 aaKnown RBP17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 NUDT13Q86X67 352 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 FAM20CQ8IXL6 584 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 OR2A1Q8NGT9 310 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 FNDC8Q8TC99 324 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 RPP25Q9BUL9 199 aaKnown RBP17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 PITHD1Q9GZP4 211 aaPredicted RBP17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 CCNB1IP1Q9NPC3 277 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 PHPT1Q9NRX4 125 aaPredicted RBP17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 IMP3Q9NV31 184 aaKnown RBP17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 POFUT2Q9Y2G5 429 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 ENPP4Q9Y6X5 453 aa17.62■□□□□ 0.41
PRPF40B-208ENST00000548436 BCHEP06276 602 aa17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 TEAD1P28347 426 aa17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 TIE1P35590 1138 aa17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 PRDX1Q06830 199 aaKnown RBP17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 PUM1Q14671 1186 aaKnown RBP eCLIP17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 KIAA1211LQ6NV74 962 aa17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 PARM1Q6UWI2 310 aa17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 ADCK2Q7Z695 626 aa17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 SLC30A8Q8IWU4 369 aa17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 FAM81AQ8TBF8 368 aa17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 CREB3L4Q8TEY5 395 aa17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 IPCEF1Q8WWN9 437 aaPredicted RBP17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 FGF14Q92915 247 aa17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 RAB8BQ92930 207 aa17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 BORCS5Q969J3 196 aa17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 QRFPRQ96P65 431 aa17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 TEFMQ96QE5 360 aaKnown RBP17.61■□□□□ 0.41
PRPF40B-208ENST00000548436 DZANK1Q9NVP4 752 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms