RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	RIPOR1	Q6ZS17	1223 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	LARP4	Q71RC2	724 aa	Known RBP eCLIP	9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	MTERF4	Q7Z6M4	381 aa	Known RBP	9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	VASH2	Q86V25	355 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	DTX1	Q86Y01	620 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	ZC3H7A	Q8IWR0	971 aa	Known RBP	9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	PARP9	Q8IXQ6	854 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	SHISA5	Q8N114	240 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	TMEM132C	Q8N3T6	1108 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	LIX1	Q8N485	282 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	CLHC1	Q8NHS4	586 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	GFM2	Q969S9	779 aa	Known RBP	9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	TM4SF18	Q96CE8	201 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	PTCHD1	Q96NR3	888 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	DCBLD2	Q96PD2	775 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	OR1F2P	Q96R84	312 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	CSF3R	Q99062	836 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	CRB3	Q9BUF7	120 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	CCDC28B	Q9BUN5	200 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	EFHD1	Q9BUP0	239 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	TMEM120A	Q9BXJ8	343 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	GPR87	Q9BY21	358 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	RPF2	Q9H7B2	306 aa	Known RBP	9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	MIEF1	Q9NQG6	463 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	PRTFDC1	Q9NRG1	225 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	C14orf105	Q9NVL8	296 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	SIRT5	Q9NXA8	310 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	NOP53	Q9NZM5	478 aa	Known RBP	9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	KCMF1	Q9P0J7	381 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	C3orf18	Q9UK00	162 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	KCND3	Q9UK17	655 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	PSME2	Q9UL46	239 aa		9.58	□□□□□ -0.88
CPSF7-221	ENST00000543545	OR2W5	A6NFC9	320 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	VSTM2B	A6NLU5	285 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	C1QTNF9B	B2RNN3	333 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	CYR61	O00622	381 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	RRP8	O43159	456 aa	Known RBP	9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	TLX3	O43711	291 aa	Predicted RBP	9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	PRMT3	O60678	531 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	LRAT	O95237	230 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	C1QTNF9	P0C862	333 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	SPTB	P11277	2137 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	SDC1	P18827	310 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	NCF2	P19878	526 aa	Predicted RBP	9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	DRD4	P21917	467 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	TACR1	P25103	407 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	PTPN4	P29074	926 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	GSTM5	P46439	218 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	ASMT	P46597	345 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	DIO3	P55073	304 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	NME5	P56597	212 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	STX1B	P61266	288 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	RPS18	P62269	152 aa	Known RBP	9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	MC1R	Q01726	317 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	TNFRSF17	Q02223	184 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	KLC1	Q07866	573 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	STX4	Q12846	297 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	CLN3	Q13286	438 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	HEPACAM	Q14CZ8	416 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	KIF26B	Q2KJY2	2108 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	NDUFAF5	Q5TEU4	345 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	FAM69B	Q5VUD6	431 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	TMEM198	Q66K66	360 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	FAAH2	Q6GMR7	532 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	MRPL14	Q6P1L8	145 aa	Known RBP	9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	UNQ6494/PRO21346	Q6UXR6	183 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	ZNF517	Q6ZMY9	492 aa	Predicted RBP	9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	SPATA21	Q7Z572	469 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	CLNK	Q7Z7G1	428 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	ZNF595	Q8IYB9	648 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	METTL21A	Q8WXB1	218 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	TANK	Q92844	425 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	GATA6	Q92908	595 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	MAEL	Q96JY0	434 aa	Known RBP	9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	MARK4	Q96L34	752 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	TGIF2	Q9GZN2	237 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	SLC26A1	Q9H2B4	701 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	WDR54	Q9H977	334 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	TEX10	Q9NXF1	929 aa	Predicted RBP	9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	KLHL14	Q9P2G3	628 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	IL17B	Q9UHF5	180 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	TRIM33	Q9UPN9	1127 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	WBP11	Q9Y2W2	641 aa	Known RBP	9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	PCDHA9	Q9Y5H5	950 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	HEATR5B	Q9P2D3	2071 aa		9.57	□□□□□ -0.88
CPSF7-221	ENST00000543545	SNRNP200	O75643	2136 aa	Known RBP	9.56	□□□□□ -0.88
CPSF7-221	ENST00000543545	IGLV3-12	A0A075B6K2	115 aa		9.56	□□□□□ -0.88
CPSF7-221	ENST00000543545	MYOCOS	A0A1B0GUC4	107 aa		9.56	□□□□□ -0.88
CPSF7-221	ENST00000543545	C1orf226	A1L170	272 aa		9.56	□□□□□ -0.88
CPSF7-221	ENST00000543545	BLACE	A4D250	179 aa		9.56	□□□□□ -0.88
CPSF7-221	ENST00000543545	WASHC1	A8K0Z3	465 aa		9.56	□□□□□ -0.88
CPSF7-221	ENST00000543545	IDS	B3KWA1	339 aa		9.56	□□□□□ -0.88
CPSF7-221	ENST00000543545	PGRMC2	O15173	223 aa		9.56	□□□□□ -0.88
CPSF7-221	ENST00000543545	CTNS	O60931	367 aa		9.56	□□□□□ -0.88
CPSF7-221	ENST00000543545	CNOT3	O75175	753 aa	Known RBP	9.56	□□□□□ -0.88
CPSF7-221	ENST00000543545	PRKRA	O75569	313 aa	Known RBP	9.56	□□□□□ -0.88
CPSF7-221	ENST00000543545	ERAL1	O75616	437 aa	Known RBP	9.56	□□□□□ -0.88
CPSF7-221	ENST00000543545	IFNA16	P05015	189 aa		9.56	□□□□□ -0.88
CPSF7-221	ENST00000543545	PRR35	P0CG20	571 aa		9.56	□□□□□ -0.88
CPSF7-221	ENST00000543545	DRD2	P14416	443 aa		9.56	□□□□□ -0.88

Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms