RNA–Protein interactions for RNA: ENST00000538995.1

RTN3-209, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 814 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-209ENST00000538995 MS4A12Q9NXJ0 267 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 PSD3Q9NYI0 1048 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 FETUBQ9UGM5 382 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 ERRFI1Q9UJM3 462 aaPredicted RBP10.8□□□□□ -0.68
RTN3-209ENST00000538995 NFU1Q9UMS0 254 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 SCN2AQ99250 2005 aa10.8□□□□□ -0.68
RTN3-209ENST00000538995 UNC79Q9P2D8 2635 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 NAV2Q8IVL1 2488 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 TRBV11-1A0A0K0K1C0 115 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 ASPDHA6ND91 283 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 A8MUA0 341 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 POC1B-GALNT4F8VUJ3 575 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 TGFBR3LH3BV60 316 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 FOXE1O00358 373 aaPredicted RBP10.79□□□□□ -0.68
RTN3-209ENST00000538995 RIPK2O43353 540 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 MAN1A2O60476 641 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 NEURL1O76050 574 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 SIX3O95343 332 aaPredicted RBP10.79□□□□□ -0.68
RTN3-209ENST00000538995 CLDN9O95484 217 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 MLYCDO95822 493 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 TGFB1P01137 390 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 STSP08842 583 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 PTX3P26022 381 aaPredicted RBP10.79□□□□□ -0.68
RTN3-209ENST00000538995 TPP2P29144 1249 aaPredicted RBP10.79□□□□□ -0.68
RTN3-209ENST00000538995 EEF1DP29692 281 aaKnown RBP10.79□□□□□ -0.68
RTN3-209ENST00000538995 PPP2R1BP30154 601 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 CYB561P49447 251 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 GPR143P51810 404 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 PER3P56645 1201 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 OC90Q02509 493 aaPredicted RBP10.79□□□□□ -0.68
RTN3-209ENST00000538995 STX4Q12846 297 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 BIKQ13323 160 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 CUL3Q13618 768 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 ZNF800Q2TB10 664 aaPredicted RBP eCLIP10.79□□□□□ -0.68
RTN3-209ENST00000538995 OR4C11Q6IEV9 310 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 TIFABQ6ZNK6 161 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 EIF1ADQ8N9N8 165 aaKnown RBP10.79□□□□□ -0.68
RTN3-209ENST00000538995 FAM98AQ8NCA5 519 aaKnown RBP10.79□□□□□ -0.68
RTN3-209ENST00000538995 MORN4Q8NDC4 146 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 OR14A16Q8NHC5 309 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 WDR20Q8TBZ3 569 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 SCYL1Q96KG9 808 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 SIGLEC12Q96PQ1 595 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 MAPKAP1Q9BPZ7 522 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 CCDC77Q9BR77 488 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 NTMT1Q9BV86 223 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 OR51B5Q9H339 312 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 LRFN1Q9P244 771 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 VTI1BQ9UEU0 232 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 PHF11Q9UIL8 331 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 PCTPQ9UKL6 214 aa10.79□□□□□ -0.68
RTN3-209ENST00000538995 A0A1B0GUH1 482 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 LRRC14BA6NHZ5 514 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 RTCAO00442 366 aaKnown RBP10.78□□□□□ -0.68
RTN3-209ENST00000538995 PLPP1O14494 284 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 NME2P1O60361 137 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 SLC25A12O75746 678 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 ZFAND5O76080 213 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 SEMA3DO95025 777 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 IFNA16P05015 189 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 RPS17P08708 135 aaKnown RBP10.78□□□□□ -0.68
RTN3-209ENST00000538995 NME2P22392 152 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 CPN2P22792 545 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 HLCSP50747 726 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 CCNG1P51959 295 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 RPS13P62277 151 aaKnown RBP10.78□□□□□ -0.68
RTN3-209ENST00000538995 IGLV3-21P80748 117 aaPredicted RBP10.78□□□□□ -0.68
RTN3-209ENST00000538995 DDX39BQ13838 428 aaKnown RBP10.78□□□□□ -0.68
RTN3-209ENST00000538995 CPSF6Q16630 551 aaKnown RBP eCLIP10.78□□□□□ -0.68
RTN3-209ENST00000538995 GGTA1PQ4G0N0 100 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 SPINK14Q6IE38 97 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 SLC25A25Q6KCM7 469 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 ADGRD1Q6QNK2 874 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 CLNKQ7Z7G1 428 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 GPALPP1Q8IXQ4 340 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 OR8K3Q8NH51 312 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 UHMK1Q8TAS1 419 aaKnown RBP10.78□□□□□ -0.68
RTN3-209ENST00000538995 NCLNQ969V3 563 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 TMEM125Q96AQ2 219 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 PHF21BQ96EK2 531 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 MTERF1Q99551 399 aaKnown RBP10.78□□□□□ -0.68
RTN3-209ENST00000538995 C1QTNF3Q9BXJ4 246 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 ALOXE3Q9BYJ1 711 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 TXLNGYQ9BZA5 131 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 NOL11Q9H8H0 719 aaKnown RBP10.78□□□□□ -0.68
RTN3-209ENST00000538995 ZNF358Q9NW07 568 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 LYARQ9NX58 379 aaKnown RBP10.78□□□□□ -0.68
RTN3-209ENST00000538995 ANKRD10Q9NXR5 420 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 PLEKHB1Q9UF11 243 aaPredicted RBP10.78□□□□□ -0.68
RTN3-209ENST00000538995 ZNF223Q9UK11 482 aaPredicted RBP10.78□□□□□ -0.68
RTN3-209ENST00000538995 OSGIN2Q9Y236 505 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 CLCA3PQ9Y6N3 262 aa10.78□□□□□ -0.68
RTN3-209ENST00000538995 ICE1Q9Y2F5 2266 aa10.77□□□□□ -0.69
RTN3-209ENST00000538995 SAP18O00422 153 aaKnown RBP10.77□□□□□ -0.69
RTN3-209ENST00000538995 OR7A17O14581 309 aa10.77□□□□□ -0.69
RTN3-209ENST00000538995 SP1P08047 785 aa10.77□□□□□ -0.69
RTN3-209ENST00000538995 RHOXF2BP0C7M4 288 aa10.77□□□□□ -0.69
RTN3-209ENST00000538995 RNF224P0DH78 156 aa10.77□□□□□ -0.69
RTN3-209ENST00000538995 COX7A2P14406 83 aa10.77□□□□□ -0.69
RTN3-209ENST00000538995 GCAP28676 217 aa10.77□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms