RNA–Protein interactions for RNA: ENST00000535906.1

VPS33B-202, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2 BASIC

Gene VPS33B, Length 2,420 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-202ENST00000535906 FAM20CQ8IXL6 584 aa12.74□□□□□ -0.37
VPS33B-202ENST00000535906 ATG16L2Q8NAA4 619 aa12.74□□□□□ -0.37
VPS33B-202ENST00000535906 OR2A1Q8NGT9 310 aa12.74□□□□□ -0.37
VPS33B-202ENST00000535906 RORBQ92753 470 aa12.74□□□□□ -0.37
VPS33B-202ENST00000535906 RUBCNLQ9H714 662 aa12.74□□□□□ -0.37
VPS33B-202ENST00000535906 ERVK-18Q9QC07 812 aa12.74□□□□□ -0.37
VPS33B-202ENST00000535906 MOSPD1Q9UJG1 213 aa12.74□□□□□ -0.37
VPS33B-202ENST00000535906 PCDHGA10Q9Y5H3 936 aa12.74□□□□□ -0.37
VPS33B-202ENST00000535906 MYO10Q9HD67 2058 aa12.74□□□□□ -0.37
VPS33B-202ENST00000535906 TICRRQ7Z2Z1 1910 aa12.74□□□□□ -0.37
VPS33B-202ENST00000535906 PPM1DO15297 605 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 CAPN5O15484 640 aaPredicted RBP12.73□□□□□ -0.37
VPS33B-202ENST00000535906 CBFA2T3O75081 653 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 GABARAPO95166 117 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 C9P02748 559 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 NR4A1P22736 598 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 CD6P30203 668 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 CDK6Q00534 326 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 DLX2Q07687 328 aaPredicted RBP12.73□□□□□ -0.37
VPS33B-202ENST00000535906 MAD2L1BPQ15013 274 aaPredicted RBP12.73□□□□□ -0.37
VPS33B-202ENST00000535906 KIAA1161Q6NSJ0 714 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 UBE3DQ7Z6J8 389 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 AMER3Q8N944 861 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 EPYCQ99645 322 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 EPS8L2Q9H6S3 715 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 SLC28A3Q9HAS3 691 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 SLC17A4Q9Y2C5 497 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 CORINQ9Y5Q5 1042 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 TMPRSS11DO60235 418 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 MRPS14O60783 128 aaKnown RBP12.73□□□□□ -0.37
VPS33B-202ENST00000535906 RNGTTO60942 597 aaKnown RBP12.73□□□□□ -0.37
VPS33B-202ENST00000535906 NTSR1P30989 418 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 RAB28P51157 221 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 PRDX1Q06830 199 aaKnown RBP12.73□□□□□ -0.37
VPS33B-202ENST00000535906 CCDC80Q76M96 950 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 PAGE2Q7Z2X7 111 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 ADCK2Q7Z695 626 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 ZNF554Q86TJ5 538 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 UCN3Q969E3 161 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 COX4I2Q96KJ9 171 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 TIMM29Q9BSF4 260 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 NT5DC2Q9H857 520 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 CLEC1BQ9P126 229 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 B3GNT3Q9Y2A9 372 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 GPSM3Q9Y4H4 160 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 TESMINQ9Y4I5 508 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 PCDHGB3Q9Y5G1 929 aa12.73□□□□□ -0.37
VPS33B-202ENST00000535906 TBC1D3DA0A087WVF3 549 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 TBC1D3IA0A087WXS9 549 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 TBC1D3EA0A087X179 549 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 TBC1D3KA0A087X1G2 549 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 A0A0G2JN53 185 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 TBC1D3FA6NER0 549 aaPredicted RBP12.72□□□□□ -0.37
VPS33B-202ENST00000535906 PRR19A6NJB7 356 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 TBC1D3LB9A6J9 549 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 E9PQ18 207 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 J3QRK9 145 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 SLC31A1O15431 190 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 ADAM23O75077 832 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 KRT75O95678 551 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 TBC1D3HP0C7X1 549 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 UQCRC2P22695 453 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 ADPRHP54922 357 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 SYT6Q5T7P8 510 aaPredicted RBP12.72□□□□□ -0.37
VPS33B-202ENST00000535906 TBC1D3GQ6DHY5 549 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 TBC1D3CQ6IPX1 549 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 DCDC5Q6ZRR9 648 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 TBC1D3Q8IZP1 549 aaPredicted RBP12.72□□□□□ -0.37
VPS33B-202ENST00000535906 PARP8Q8N3A8 854 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 ZNF540Q8NDQ6 660 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 FAM131CQ96AQ9 280 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 PITX2Q99697 317 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 AICDAQ9GZX7 198 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 S1PR5Q9H228 398 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 CCNB1IP1Q9NPC3 277 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 DNAAF2Q9NVR5 837 aaKnown RBP12.72□□□□□ -0.37
VPS33B-202ENST00000535906 TEX10Q9NXF1 929 aaPredicted RBP12.72□□□□□ -0.37
VPS33B-202ENST00000535906 LMCD1Q9NZU5 365 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 ZNF451Q9Y4E5 1061 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 LYVE1Q9Y5Y7 322 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 SNRNP200O75643 2136 aaKnown RBP12.72□□□□□ -0.37
VPS33B-202ENST00000535906 AXIN1O15169 862 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 SLC22A1O15245 554 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 NDUFS4O43181 175 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 DNTTP04053 509 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 SERPIND1P05546 499 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 ARAFP10398 606 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 COL9A1P20849 921 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 MAP2K4P45985 399 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 RXRGP48443 463 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 MANFP55145 182 aaKnown RBP12.72□□□□□ -0.37
VPS33B-202ENST00000535906 PCBP3P57721 371 aaKnown RBP12.72□□□□□ -0.37
VPS33B-202ENST00000535906 RPS26P62854 115 aaKnown RBP12.72□□□□□ -0.37
VPS33B-202ENST00000535906 NPRL3Q12980 569 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 NR1D2Q14995 579 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 HEPACAMQ14CZ8 416 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 ZNF630Q2M218 657 aaPredicted RBP12.72□□□□□ -0.37
VPS33B-202ENST00000535906 PROX2Q3B8N5 592 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 IFI44LQ53G44 452 aa12.72□□□□□ -0.37
VPS33B-202ENST00000535906 CRB2Q5IJ48 1285 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms