RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 CALM3P0DP25 149 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 NQO2P16083 231 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 TGM2P21980 687 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 CCNOP22674 350 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 GIFP27352 417 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 HTR2AP28223 471 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 CD40LGP29965 261 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 ALDH3A1P30838 453 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 FMO4P31512 558 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 YWHABP31946 246 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 DCTDP32321 178 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 ADRA1AP35348 466 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 HMGCLP35914 325 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 FDFT1P37268 417 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 RGS4P49798 205 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 RAB9AP51151 201 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 MVDP53602 400 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 CDH13P55290 713 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 PRPS1P60891 318 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 RAB11AP62491 216 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 CSNK2A1P68400 391 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 CBX1P83916 185 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 ADORA2A-AS1P86434 159 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 ECT2LQ008S8 904 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 GLO1Q04760 184 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 PRKAA1Q13131 559 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 SHBQ15464 509 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 RAB11BQ15907 218 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 SLC5A12Q1EHB4 618 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 RUNDC3AQ59EK9 446 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 RABGAP1LQ5R372 815 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 CCNYL2Q5T2Q4 361 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 PRAMEF7Q5VXH5 474 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 ATG9BQ674R7 924 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 ZNF324BQ6AW86 544 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 TMEM211Q6ICI0 200 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 TMEM71Q6P5X7 295 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 FAM171BQ6P995 826 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 ANO5Q75V66 913 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 UTS2BQ765I0 119 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 TRPM8Q7Z2W7 1104 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 FAM122BQ7Z309 247 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 SLC51BQ86UW2 128 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 LRRC8AQ8IWT6 810 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 AQP12AQ8IXF9 295 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 ARL14EPQ8N8R7 260 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 AMER3Q8N944 861 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 CSNK2A3Q8NEV1 391 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 NEUROG1Q92886 237 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 RIT1Q92963 219 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 ARHGEF26Q96DR7 871 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 LINGO1Q96FE5 620 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 PLEKHA8Q96JA3 519 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 TESK2Q96S53 571 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 PELOQ9BRX2 385 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 CHID1Q9BWS9 393 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 IL22Q9GZX6 179 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 SIRPDQ9H106 197 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 GAL3ST2Q9H3Q3 398 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 TMEM231Q9H6L2 316 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 WDR76Q9H967 626 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 COG4Q9H9E3 785 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 MEAF6Q9HAF1 191 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 LRRC4Q9HBW1 653 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 HHATLQ9HCP6 504 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 FZD3Q9NPG1 666 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 PAG1Q9NWQ8 432 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 MRPL22Q9NWU5 206 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 GTSE1Q9NYZ3 720 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 CNOT8Q9UFF9 292 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 POLLQ9UGP5 575 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 APOBEC3BQ9UH17 382 aaKnown RBP4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 TMEM184BQ9Y519 407 aaPredicted RBP4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 PCDHB7Q9Y5E2 793 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 CACNG2Q9Y698 323 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 PLB1Q6P1J6 1458 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 FHAD1B1AJZ9 1412 aa4.54□□□□□ -1.68
CCDC88A-210ENST00000468534 A0A0B4J293 547 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 FAM149AA5PLN7 773 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 A8MUI8 341 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 PGRMC1O00264 195 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 NDUFS4O43181 175 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 GATCO43716 136 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 KDELR3O43731 214 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 SCN2BO60939 215 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 GPX5O75715 221 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 SLC25A12O75746 678 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 ADAP00813 363 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 SNRPAP09012 282 aaKnown RBP4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 ALPIP09923 528 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 HSMCR30P0CW71 290 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 PNMTP11086 282 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 PEPDP12955 493 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 AKR1A1P14550 325 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 PFKFB1P16118 471 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 LBPP18428 481 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 ATF6P18850 670 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 MATN1P21941 496 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 DGKAP23743 735 aa4.53□□□□□ -1.68
CCDC88A-210ENST00000468534 DNASE1P24855 282 aa4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms