RNA–Protein interactions for RNA: ENST00000455596.5

HMGB3-205, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene HMGB3, Length 793 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-205ENST00000455596 IFNA16P05015 189 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 CPN2P22792 545 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 CYB561P49447 251 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 PMP22Q01453 160 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 STX4Q12846 297 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 ELAVL1Q15717 326 aaKnown RBP19.81■□□□□ 0.76
HMGB3-205ENST00000455596 OR4C11Q6IEV9 310 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 GFRALQ6UXV0 394 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 ARMC10Q8N2F6 343 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 TMEM132CQ8N3T6 1108 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 RNF175Q8N4F7 328 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 FAM98AQ8NCA5 519 aaKnown RBP19.81■□□□□ 0.76
HMGB3-205ENST00000455596 NCLNQ969V3 563 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 PHF21BQ96EK2 531 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 MTERF1Q99551 399 aaKnown RBP19.81■□□□□ 0.76
HMGB3-205ENST00000455596 CCDC77Q9BR77 488 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 HES7Q9BYE0 225 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 ALOXE3Q9BYJ1 711 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 XPR1Q9UBH6 696 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 FBXW2Q9UKT8 454 aa19.81■□□□□ 0.76
HMGB3-205ENST00000455596 STX16-NPEPL1H3BU86 382 aa19.8■□□□□ 0.76
HMGB3-205ENST00000455596 STX16O14662 325 aa19.8■□□□□ 0.76
HMGB3-205ENST00000455596 SMIM24O75264 130 aa19.8■□□□□ 0.76
HMGB3-205ENST00000455596 SP1P08047 785 aa19.8■□□□□ 0.76
HMGB3-205ENST00000455596 ABHD2P08910 425 aa19.8■□□□□ 0.76
HMGB3-205ENST00000455596 SNRPAP09012 282 aaKnown RBP19.8■□□□□ 0.76
HMGB3-205ENST00000455596 MST1P26927 711 aa19.8■□□□□ 0.76
HMGB3-205ENST00000455596 ARL1P40616 181 aaPredicted RBP19.8■□□□□ 0.76
HMGB3-205ENST00000455596 ARFIP1P53367 373 aa19.8■□□□□ 0.76
HMGB3-205ENST00000455596 KCNK10P57789 538 aa19.8■□□□□ 0.76
HMGB3-205ENST00000455596 SERTAD2Q14140 314 aa19.8■□□□□ 0.76
HMGB3-205ENST00000455596 CPSF6Q16630 551 aaKnown RBP eCLIP19.8■□□□□ 0.76
HMGB3-205ENST00000455596 LGSNQ5TDP6 509 aa19.8■□□□□ 0.76
HMGB3-205ENST00000455596 ZNF468Q5VIY5 522 aaPredicted RBP19.8■□□□□ 0.76
HMGB3-205ENST00000455596 SLC25A25Q6KCM7 469 aa19.8■□□□□ 0.76
HMGB3-205ENST00000455596 TRMT10CQ7L0Y3 403 aaKnown RBP19.8■□□□□ 0.76
HMGB3-205ENST00000455596 L3MBTL4Q8NA19 623 aa19.8■□□□□ 0.76
HMGB3-205ENST00000455596 ATP6V1E2Q96A05 226 aa19.8■□□□□ 0.76
HMGB3-205ENST00000455596 TRIM45Q9H8W5 580 aaPredicted RBP19.8■□□□□ 0.76
HMGB3-205ENST00000455596 SEC14L3Q9UDX4 400 aa19.8■□□□□ 0.76
HMGB3-205ENST00000455596 VTI1BQ9UEU0 232 aa19.8■□□□□ 0.76
HMGB3-205ENST00000455596 CLCA3PQ9Y6N3 262 aa19.8■□□□□ 0.76
HMGB3-205ENST00000455596 COL12A1Q99715 3063 aa19.79■□□□□ 0.76
HMGB3-205ENST00000455596 PLPP1O14494 284 aa19.79■□□□□ 0.76
HMGB3-205ENST00000455596 LRRTM2O43300 516 aa19.79■□□□□ 0.76
HMGB3-205ENST00000455596 LDB3O75112 727 aa19.79■□□□□ 0.76
HMGB3-205ENST00000455596 CLDN9O95484 217 aa19.79■□□□□ 0.76
HMGB3-205ENST00000455596 STSP08842 583 aa19.79■□□□□ 0.76
HMGB3-205ENST00000455596 RHOXF2BP0C7M4 288 aa19.79■□□□□ 0.76
HMGB3-205ENST00000455596 PTX3P26022 381 aaPredicted RBP19.79■□□□□ 0.76
HMGB3-205ENST00000455596 TRHRP34981 398 aaPredicted RBP19.79■□□□□ 0.76
HMGB3-205ENST00000455596 GPR143P51810 404 aa19.79■□□□□ 0.76
HMGB3-205ENST00000455596 PER3P56645 1201 aa19.79■□□□□ 0.76
HMGB3-205ENST00000455596 RPS13P62277 151 aaKnown RBP19.79■□□□□ 0.76
HMGB3-205ENST00000455596 SRSF11Q05519 484 aaKnown RBP19.79■□□□□ 0.76
HMGB3-205ENST00000455596 SLAMF1Q13291 335 aa19.79■□□□□ 0.76
HMGB3-205ENST00000455596 GALNTL5Q7Z4T8 443 aa19.79■□□□□ 0.76
HMGB3-205ENST00000455596 C7orf57Q8NEG2 295 aa19.79■□□□□ 0.76
HMGB3-205ENST00000455596 THAP3Q8WTV1 239 aaPredicted RBP19.79■□□□□ 0.76
HMGB3-205ENST00000455596 DAZLQ92904 295 aaKnown RBP19.79■□□□□ 0.76
HMGB3-205ENST00000455596 MRPL57Q9BQC6 102 aaKnown RBP19.79■□□□□ 0.76
HMGB3-205ENST00000455596 RHOXF2Q9BQY4 288 aa19.79■□□□□ 0.76
HMGB3-205ENST00000455596 SORBS1Q9BX66 1292 aaKnown RBP19.79■□□□□ 0.76
HMGB3-205ENST00000455596 NOL11Q9H8H0 719 aaKnown RBP19.79■□□□□ 0.76
HMGB3-205ENST00000455596 MS4A12Q9NXJ0 267 aa19.79■□□□□ 0.76
HMGB3-205ENST00000455596 ZNF223Q9UK11 482 aaPredicted RBP19.79■□□□□ 0.76
HMGB3-205ENST00000455596 RNF11Q9Y3C5 154 aa19.79■□□□□ 0.76
HMGB3-205ENST00000455596 POLEQ07864 2286 aa19.79■□□□□ 0.76
HMGB3-205ENST00000455596 CROCCQ5TZA2 2017 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 MYOCOSA0A1B0GUC4 107 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 A0A1B0GUH1 482 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 A1L4Q6 167 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 OR7A17O14581 309 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 SLC25A12O75746 678 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 UNC5CO95185 931 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 MLYCDO95822 493 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 HLCSP50747 726 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 CCNG1P51959 295 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 MAPKAPK3Q16644 382 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 ZCCHC7Q8N3Z6 543 aaKnown RBP19.78■□□□□ 0.76
HMGB3-205ENST00000455596 MORN4Q8NDC4 146 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 OR14A16Q8NHC5 309 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 WDR20Q8TBZ3 569 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 TMEM125Q96AQ2 219 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 NTMT1Q9BV86 223 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 MRPL46Q9H2W6 279 aaKnown RBP19.78■□□□□ 0.76
HMGB3-205ENST00000455596 PSD3Q9NYI0 1048 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 PHF11Q9UIL8 331 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 PCTPQ9UKL6 214 aa19.78■□□□□ 0.76
HMGB3-205ENST00000455596 EML6Q6ZMW3 1958 aa19.77■□□□□ 0.76
HMGB3-205ENST00000455596 ASPDHA6ND91 283 aa19.77■□□□□ 0.76
HMGB3-205ENST00000455596 FOXE1O00358 373 aaPredicted RBP19.77■□□□□ 0.76
HMGB3-205ENST00000455596 RIPK2O43353 540 aa19.77■□□□□ 0.76
HMGB3-205ENST00000455596 ITGA10O75578 1167 aa19.77■□□□□ 0.76
HMGB3-205ENST00000455596 ZFAND5O76080 213 aa19.77■□□□□ 0.76
HMGB3-205ENST00000455596 TNNI3P19429 210 aa19.77■□□□□ 0.76
HMGB3-205ENST00000455596 ALDH6A1Q02252 535 aaKnown RBP19.77■□□□□ 0.76
HMGB3-205ENST00000455596 CUL3Q13618 768 aa19.77■□□□□ 0.76
HMGB3-205ENST00000455596 ZRSR2Q15696 482 aaKnown RBP19.77■□□□□ 0.76
HMGB3-205ENST00000455596 ADGRD1Q6QNK2 874 aa19.77■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms