RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 SNHG28P0DPA3 235 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 TROVE2P10155 538 aaKnown RBP eCLIP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 HAPLN1P10915 354 aaPredicted RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 IRF2P14316 349 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 SYT1P21579 422 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 MARK3P27448 753 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 AHRP35869 848 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 CD86P42081 329 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 NPBWR1P48145 328 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 SLC26A2P50443 739 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 ZNF81P51508 661 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 NOVA1P51513 510 aaKnown RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 MTCP1P56278 107 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 EVCP57679 992 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 CTAG1AP78358 180 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 ABATP80404 500 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 COG7P83436 770 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 ZNF155Q12901 538 aaPredicted RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 ILF2Q12905 390 aaKnown RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 SNX1Q13596 522 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 RCN1Q15293 331 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 SNCBQ16143 134 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 INAQ16352 499 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 SGCBQ16585 318 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 TPD52L1Q16890 204 aaPredicted RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 CCDC14Q49A88 953 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 ELFN2Q5R3F8 820 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 CCDC122Q5T0U0 273 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 LRRC38Q5VT99 294 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 CWC27Q6UX04 472 aaKnown RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 STOX1Q6ZVD7 989 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 MIER3Q7Z3K6 550 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 TMPRSS11BQ86T26 416 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 TMEM110Q86TL2 294 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 LUZP1Q86V48 1076 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 SLC39A11Q8N1S5 342 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 OR5M8Q8NGP6 311 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 VANGL1Q8TAA9 524 aaPredicted RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 ACMSDQ8TDX5 336 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 RNF128Q8TEB7 428 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 SMG7Q92540 1137 aaKnown RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 P3H4Q92791 437 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 TANKQ92844 425 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 SEMA4DQ92854 862 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 DAZLQ92904 295 aaKnown RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 ABTB1Q969K4 478 aaPredicted RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 MSANTD3Q96H12 275 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 ZNF385AQ96PM9 386 aaKnown RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 TMEM237Q96Q45 408 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 GSDMAQ96QA5 445 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 CGREF1Q99674 301 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 TCHPQ9BT92 498 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 SF3B5Q9BWJ5 86 aaKnown RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 C1QTNF7Q9BXJ2 289 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 VN1R1Q9GZP7 353 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 VCX3BQ9H321 246 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 TMPRSS5Q9H3S3 457 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 CWH43Q9H720 699 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 VIPAS39Q9H9C1 493 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 FKRPQ9H9S5 495 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 ACKR4Q9NPB9 350 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 MRPL17Q9NRX2 175 aaKnown RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 ZNF701Q9NV72 531 aaPredicted RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 INTS10Q9NVR2 710 aaKnown RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 ZNHIT6Q9NWK9 470 aaKnown RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 C6orf203Q9P0P8 240 aaPredicted RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 ZMAT5Q9UDW3 170 aaKnown RBP3.8□□□□□ -1.8
HMGB3-203ENST00000430118 DLGAP4Q9Y2H0 992 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 SNX9Q9Y5X1 595 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 PTGDR2Q9Y5Y4 395 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 MIA3Q5JRA6 1907 aa3.8□□□□□ -1.8
HMGB3-203ENST00000430118 PATJQ8NI35 1801 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 COL1A2P08123 1366 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 IGLV5-52A0A0A0MRZ9 124 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 A0A0B4J203 849 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 GOLGA6L7A0A1B0GV03 622 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 A0A1W2PPK0 400 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 MAGEA13PA6NCF6 341 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 H3BQF6 201 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 SOCS2O14508 198 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 TNFRSF13BO14836 293 aaPredicted RBP3.79□□□□□ -1.8
HMGB3-203ENST00000430118 ATP6AP2O75787 350 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 KIAA0754O94854 1291 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 TRIM16O95361 564 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 RPSAP08865 295 aaKnown RBP3.79□□□□□ -1.8
HMGB3-203ENST00000430118 CCNCP24863 283 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 CD38P28907 300 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 KCNJ1P48048 391 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 NOVP48745 357 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 HTR6P50406 440 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 CLCN4P51793 760 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 LUMP51884 338 aaPredicted RBP3.79□□□□□ -1.8
HMGB3-203ENST00000430118 TPD52P55327 224 aaPredicted RBP3.79□□□□□ -1.8
HMGB3-203ENST00000430118 GSDMDP57764 484 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 SULT2A1Q06520 285 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 KLC1Q07866 573 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 MFAP5Q13361 173 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 TSTA3Q13630 321 aaPredicted RBP3.79□□□□□ -1.8
HMGB3-203ENST00000430118 HTR4Q13639 388 aa3.79□□□□□ -1.8
HMGB3-203ENST00000430118 DHX34Q14147 1143 aaKnown RBP3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms