RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 CLDN16Q9Y5I7 305 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 LIPGQ9Y5X9 500 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 SPACA6W5XKT8 324 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 MED13LQ71F56 2210 aa13.48□□□□□ -0.25
SDC1-204ENST00000429035 PDZD2O15018 2839 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 C17orf105B2RV13 164 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 E7ESA3 106 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 CCDC188H7C350 402 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 RTCAO00442 366 aaKnown RBP13.47□□□□□ -0.25
SDC1-204ENST00000429035 STMN1P16949 149 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 SSTR1P30872 391 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 CHRNB4P30926 498 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 SSR2P43308 183 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 GPR143P51810 404 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 HK2P52789 917 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 IRF8Q02556 426 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 CHIT1Q13231 466 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 DDX39BQ13838 428 aaKnown RBP13.47□□□□□ -0.25
SDC1-204ENST00000429035 SLMAPQ14BN4 828 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 OR4D1Q15615 310 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 HIST2H2ACQ16777 129 aaPredicted RBP13.47□□□□□ -0.25
SDC1-204ENST00000429035 ZNF750Q32MQ0 723 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 PAGE2BQ5JRK9 111 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 HIST2H2AA3Q6FI13 130 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 SULT1C3Q6IMI6 304 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 GK5Q6ZS86 529 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 SLC22A16Q86VW1 577 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 TMEM200AQ86VY9 491 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 CREG2Q8IUH2 290 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 CCDC71Q8IV32 467 aaPredicted RBP13.47□□□□□ -0.25
SDC1-204ENST00000429035 CTAGE3PQ8IX95 158 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 ZNF321PQ8N8H1 164 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 OR14A16Q8NHC5 309 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 SLC2A12Q8TD20 617 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 SMC6Q96SB8 1091 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 ALOXE3Q9BYJ1 711 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 TTTY12Q9BZ98 90 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 UCK2Q9BZX2 261 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 EXO5Q9H790 373 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 NT5DC2Q9H857 520 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 MYOTQ9UBF9 498 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 COPS7AQ9UBW8 275 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 SAR1BQ9Y6B6 198 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 C2CD3Q4AC94 2353 aa13.47□□□□□ -0.25
SDC1-204ENST00000429035 AKAP9Q99996 3911 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 SYNDIG1LA6NDD5 238 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 CXorf49A8MYA2 514 aaPredicted RBP13.46□□□□□ -0.25
SDC1-204ENST00000429035 SUPT3HB4E1H0 165 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 SAP18O00422 153 aaKnown RBP13.46□□□□□ -0.25
SDC1-204ENST00000429035 CYR61O00622 381 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 PRAMEF4O60810 478 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 SUPT3HO75486 399 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 TBX6O95947 436 aaPredicted RBP13.46□□□□□ -0.25
SDC1-204ENST00000429035 CD1DP15813 335 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 CD22P20273 847 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 CPN2P22792 545 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 GMPRP36959 345 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 KCNC1P48547 511 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 DNASE1L1P49184 302 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 NUP107P57740 925 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 PMPCAQ10713 525 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 CALCOCO2Q13137 446 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 EFTUD2Q15029 972 aaKnown RBP eCLIP13.46□□□□□ -0.258e-9■■■■■ 27
SDC1-204ENST00000429035 ADPRMQ3LIE5 342 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 PRAMEF9Q5VWM5 478 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 ZNF585AQ6P3V2 769 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 ZNF793Q6ZN11 406 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 RTL4Q6ZR62 310 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 FAM47EQ6ZV65 393 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 RAPH1Q70E73 1250 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 MYLK4Q86YV6 388 aaPredicted RBP13.46□□□□□ -0.25
SDC1-204ENST00000429035 OR10Q1Q8NGQ4 319 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 SEC16BQ96JE7 1060 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 SCYL1Q96KG9 808 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 KCNC2Q96PR1 638 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 RBBP8Q99708 897 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 MAPKAP1Q9BPZ7 522 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 ROGDIQ9GZN7 287 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 PITHD1Q9GZP4 211 aaPredicted RBP13.46□□□□□ -0.25
SDC1-204ENST00000429035 ENKD1Q9H0I2 346 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 EHD1Q9H4M9 534 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 LDAHQ9H6V9 325 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 MCCC2Q9HCC0 563 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 PNPLA3Q9NST1 481 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 TNFRSF10DQ9UBN6 386 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 PPIEQ9UNP9 301 aaKnown RBP13.46□□□□□ -0.25
SDC1-204ENST00000429035 HRH3Q9Y5N1 445 aa13.46□□□□□ -0.25
SDC1-204ENST00000429035 DCHS2Q6V1P9 2916 aa13.46□□□□□ -0.26
SDC1-204ENST00000429035 NCKAP5O14513 1909 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 TMEM200CA6NKL6 621 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 CTNSO60931 367 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 P04436 131 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 COX7A2P14406 83 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 GP5P40197 560 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 RAP1GDS1P52306 607 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 ATP6V0D1P61421 351 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 LAPTM5Q13571 262 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 SERTAD2Q14140 314 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 LRRC70Q7Z2Q7 622 aa13.45□□□□□ -0.26
SDC1-204ENST00000429035 PDPRQ8NCN5 879 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms