RNA–Protein interactions for RNA: ENST00000414978.5

MCF2-204, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,813 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-204ENST00000414978 PDE1BQ01064 536 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 PLP2Q04941 152 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 SRSF1Q07955 248 aaKnown RBP eCLIP2.39□□□□□ -2.03
MCF2-204ENST00000414978 CTTNQ14247 550 aaKnown RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 HNF4GQ14541 408 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 ACKR1Q16570 336 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 CDO1Q16878 200 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 N4BP2L1Q5TBK1 243 aaPredicted RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 AP1ARQ63HQ0 302 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 OGFOD2Q6N063 350 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 METTL2BQ6P1Q9 378 aaKnown RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 LINGO2Q7L985 606 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 ZNF573Q86YE8 665 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 LEMD2Q8NC56 503 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 RDM1Q8NG50 284 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 OR5R1Q8NH85 324 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 C9orf43Q8TAL5 461 aaPredicted RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 SLC35F5Q8WV83 523 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 SSMEM1Q8WWF3 244 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 RAD54LQ92698 747 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 FUBP1Q96AE4 644 aaKnown RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 REPS1Q96D71 796 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 METTL2AQ96IZ6 378 aaKnown RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 GSDMCQ9BYG8 508 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 TFB2MQ9H5Q4 396 aaKnown RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 HHATLQ9HCP6 504 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 CENPMQ9NSP4 180 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 PCDHA12Q9UN75 941 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 GPR132Q9UNW8 380 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 PLCL2Q9UPR0 1127 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 WDR83OSQ9Y284 106 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 USP24Q9UPU5 2620 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 CACNA1BQ00975 2339 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 TNFSF12-TNFSF13A0A0A6YY99 330 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 MAGEB16A2A368 324 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 C17orf102A2RUQ5 167 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 DUXAA6NLW8 204 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 RRP8O43159 456 aaKnown RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 ATG13O75143 517 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 SNNO75324 88 aaPredicted RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 STBD1O95210 358 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 PIGNO95427 931 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 WNT1P04628 370 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 HOXD9P28356 352 aaPredicted RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 LHX1P48742 406 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 CCL23P55773 120 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 PLD1Q13393 1074 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 RIPK1Q13546 671 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 PTPRRQ15256 657 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 MAPK6Q16659 721 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 ZNF789Q5FWF6 425 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 XKR9Q5GH70 373 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 NAIF1Q69YI7 327 aaPredicted RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 OR7E24Q6IFN5 339 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 ZSCAN25Q6NSZ9 544 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 TMEM220Q6QAJ8 160 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 SLC16A12Q6ZSM3 486 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 TMEM179Q6ZVK1 233 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 WDR53Q7Z5U6 358 aaPredicted RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 NRROSQ86YC3 692 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 KDM8Q8N371 416 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 OR52I2Q8NH67 350 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 HDAC7Q8WUI4 952 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 WDR77Q9BQA1 342 aaPredicted RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 PSD2Q9BQI7 771 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 RNF121Q9H920 327 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 ROPN1Q9HAT0 212 aaPredicted RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 KCNK13Q9HB14 408 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 A4GALTQ9NPC4 353 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 CHST11Q9NPF2 352 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 TRAF3IP3Q9Y228 551 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 FOXA2Q9Y261 457 aaPredicted RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 U3KQV3 271 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 ZMYM6O95789 1325 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 CACNA1IQ9P0X4 2223 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 UNC80Q8N2C7 3258 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 A0A0U1RQV5 110 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 ANKRD61A6NGH8 418 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 BECN2A8MW95 431 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 TEX46H3BTG2 121 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 O00370 1275 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 PSMD3O43242 534 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 NDUFB8O95169 186 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 LUC7L3O95232 432 aaKnown RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 RAB40ALP0C0E4 278 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 CLUP10909 449 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 PLA2G2AP14555 144 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 MYOD1P15172 320 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 CHRNB2P17787 502 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 ARF4P18085 180 aaPredicted RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 ARRB2P32121 409 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 APOBEC1P41238 236 aaKnown RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 SH3BGRP55822 239 aaPredicted RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 SIRPAP78324 504 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 FAM27E3Q08E93 113 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 KIF5AQ12840 1032 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 NECTIN1Q15223 517 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 IMMTQ16891 758 aaKnown RBP2.39□□□□□ -2.03
MCF2-204ENST00000414978 AADACL4Q5VUY2 407 aa2.39□□□□□ -2.03
MCF2-204ENST00000414978 Q6ZSV7 163 aa2.39□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms