RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 CFAP52Q8N1V2 620 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 CERS5Q8N5B7 392 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 OR2T4Q8NH00 348 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 NFKBIDQ8NI38 313 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 PPP1R35Q8TAP8 253 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 JPH3Q8WXH2 748 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 KCTD12Q96CX2 325 aaKnown RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 TAS2R3Q9NYW6 316 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 PPM1HQ9ULR3 514 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 SCML1Q9UN30 329 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 HIF3AQ9Y2N7 669 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 COL1A1P02452 1464 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 A0A0U1RQF3 1178 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 TTC24A2A3L6 582 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 CPSF4LA6NMK7 179 aaKnown RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 YJEFN3A6XGL0 299 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 RNF225M0QZC1 329 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 NDUFS4O43181 175 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 TLX2O43763 284 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ATE1O95260 518 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 PAK4O96013 591 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 MT-CYBP00156 380 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 AHSGP02765 367 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ITGA5P08648 1049 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 CKMT2P17540 419 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 AHCYP23526 432 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 KDELR2P33947 212 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 MTNR1AP48039 350 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ART1P52961 327 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 HSD17B7P56937 341 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 MOGSQ13724 837 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 SPHARQ15513 63 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 TGFBIQ15582 683 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 TECRLQ5HYJ1 363 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 C6orf136Q5SQH8 315 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 SLC35F1Q5T1Q4 408 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 PIAS4Q8N2W9 510 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 VWA5B2Q8N398 1253 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 TFGQ92734 400 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 DAZLQ92904 295 aaKnown RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 MAELQ96JY0 434 aaKnown RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 OR4K3Q96R72 315 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ZNF587Q96SQ5 575 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ANKRD60Q9BZ19 345 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 CHIAQ9BZP6 476 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 BRF2Q9HAW0 419 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 SLC39A1Q9NY26 324 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 KLHL9Q9P2J3 617 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 KLHL13Q9P2N7 655 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ZDHHC2Q9UIJ5 367 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 BTNL2Q9UIR0 455 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 DHDHQ9UQ10 334 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 A0A0U1RQJ8 604 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 OR51F1A6NGY5 319 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 E7EQ34 232 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 RFPL2O75678 378 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 SYNGR4O95473 234 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 C8AP07357 584 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 HAPLN1P10915 354 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ADH5P11766 374 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 IFI30P13284 250 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 VAMP1P23763 118 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 CSKP41240 450 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 BDKRB1P46663 353 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ARRB1P49407 418 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 GPX6P59796 221 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 PRPS1P60891 318 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 PROX2Q3B8N5 592 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 TBRG1Q3YBR2 411 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 SLC6A19Q695T7 634 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 C22orf39Q6P5X5 142 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 SMARCD3Q6STE5 483 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ZNF704Q6ZNC4 412 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 HFE2Q6ZVN8 426 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ZNF598Q86UK7 904 aaKnown RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ANKRD46Q86W74 232 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 CBARPQ8N350 705 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 FAM174AQ8TBP5 190 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 LRRN4Q8WUT4 740 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 HOXB13Q92826 284 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-203ENST00000409050 KLHL15Q96M94 604 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 SLC2A13Q96QE2 648 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 EPHA6Q9UF33 1036 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 PADI2Q9Y2J8 665 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 YIPF1Q9Y548 306 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 NFS1Q9Y697 457 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ZSCAN5BA6NJL1 495 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 J3QLW9 94 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 TOR1AO14656 332 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 PEX10O60683 326 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 SC5DO75845 299 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 FGF4P08620 206 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 ZNF19P17023 458 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 NDUFV2P19404 249 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 CHMP24386 653 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 PLA2G16P53816 162 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 GDF10P55107 478 aa5.87□□□□□ -1.47
SCN1A-203ENST00000409050 GINS1Q14691 196 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms