RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 RAB23Q9ULC3 237 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 FABP12A6NFH5 140 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 KPNA5O15131 536 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 ADAP00813 363 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 IL1AP01583 271 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 GSTM1P09488 218 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 ARAFP10398 606 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 SRCP12931 536 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 RPS13P62277 151 aaKnown RBP20.19■□□□□ 0.82
UPF3A-202ENST00000375299 PLD1Q13393 1074 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 NAE1Q13564 534 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 VEPH1Q14D04 833 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 DUSP7Q16829 419 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 EEF1AKMT2Q5JPI9 291 aaKnown RBP20.19■□□□□ 0.82
UPF3A-202ENST00000375299 USP45Q70EL2 814 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 TMEM173Q86WV6 379 aaPredicted RBP20.19■□□□□ 0.82
UPF3A-202ENST00000375299 CACTIN-AS1Q8N1I8 211 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 PROKR2Q8NFJ6 384 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 CREB3L4Q8TEY5 395 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 OR4K3Q96R72 315 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 MCOLN1Q9GZU1 580 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 REV1Q9UBZ9 1251 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 RPL36Q9Y3U8 105 aaKnown RBP20.19■□□□□ 0.82
UPF3A-202ENST00000375299 SNX11Q9Y5W9 270 aa20.19■□□□□ 0.82
UPF3A-202ENST00000375299 KIAA1671Q9BY89 1806 aa20.18■□□□□ 0.82
UPF3A-202ENST00000375299 ARHGEF33A8MVX0 844 aa20.18■□□□□ 0.82
UPF3A-202ENST00000375299 LATS1O95835 1130 aa20.18■□□□□ 0.82
UPF3A-202ENST00000375299 LGI1O95970 557 aa20.18■□□□□ 0.82
UPF3A-202ENST00000375299 CHI3L1P36222 383 aaPredicted RBP20.18■□□□□ 0.82
UPF3A-202ENST00000375299 FEN1P39748 380 aaKnown RBP20.18■□□□□ 0.82
UPF3A-202ENST00000375299 ZNF91Q05481 1191 aa20.18■□□□□ 0.82
UPF3A-202ENST00000375299 ZNF763Q0D2J5 394 aa20.18■□□□□ 0.82
UPF3A-202ENST00000375299 RNLSQ5VYX0 342 aa20.18■□□□□ 0.82
UPF3A-202ENST00000375299 AGTRAPQ6RW13 159 aa20.18■□□□□ 0.82
UPF3A-202ENST00000375299 PHC2Q8IXK0 858 aa20.18■□□□□ 0.82
UPF3A-202ENST00000375299 OR5AK3PQ8NH89 298 aa20.18■□□□□ 0.82
UPF3A-202ENST00000375299 UBASH3BQ8TF42 649 aa20.18■□□□□ 0.82
UPF3A-202ENST00000375299 CIDECQ96AQ7 238 aaPredicted RBP20.18■□□□□ 0.82
UPF3A-202ENST00000375299 GON7Q9BXV9 100 aa20.18■□□□□ 0.82
UPF3A-202ENST00000375299 UCK2Q9BZX2 261 aa20.18■□□□□ 0.82
UPF3A-202ENST00000375299 TXNL4BQ9NX01 149 aaKnown RBP20.18■□□□□ 0.82
UPF3A-202ENST00000375299 PCDHB7Q9Y5E2 793 aa20.18■□□□□ 0.82
UPF3A-202ENST00000375299 TRBV4-1A0A0J9YWV2 114 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 ERVH48-1M5A8F1 160 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 TMCC2O75069 709 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 RPL17P18621 184 aaKnown RBP20.17■□□□□ 0.82
UPF3A-202ENST00000375299 HNRNPA0Q13151 305 aaKnown RBP20.17■□□□□ 0.82
UPF3A-202ENST00000375299 C1DQ13901 141 aaKnown RBP20.17■□□□□ 0.82
UPF3A-202ENST00000375299 LIPKQ5VXJ0 399 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 PHF6Q8IWS0 365 aaKnown RBP eCLIP20.17■□□□□ 0.82
UPF3A-202ENST00000375299 CLDN22Q8N7P3 220 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 OR2AP1Q8NGE2 309 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 REPS1Q96D71 796 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 DIRAS2Q96HU8 199 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 SLC6A18Q96N87 628 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 TMEM121BQ9BXQ6 578 aaPredicted RBP20.17■□□□□ 0.82
UPF3A-202ENST00000375299 IRF2BPLQ9H1B7 796 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 RC3H2Q9HBD1 1191 aaKnown RBP20.17■□□□□ 0.82
UPF3A-202ENST00000375299 A0A1W2PQL4 384 aaPredicted RBP20.17■□□□□ 0.82
UPF3A-202ENST00000375299 MYL12BO14950 172 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 GPR37L1O60883 481 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 MTX2O75431 263 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 CSF2P04141 144 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 SRPRAP08240 638 aaKnown RBP20.17■□□□□ 0.82
UPF3A-202ENST00000375299 KIR2DL3P43628 341 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 ILKQ13418 452 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 QPRTQ15274 297 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 SLC5A12Q1EHB4 618 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 SAXO2Q658L1 398 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 C12orf73Q69YU5 71 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 FAM92BQ6ZTR7 304 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 TCTE3Q8IZS6 198 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 TSSK6Q9BXA6 273 aa20.17■□□□□ 0.82
UPF3A-202ENST00000375299 ELAC1Q9H777 363 aaKnown RBP20.17■□□□□ 0.82
UPF3A-202ENST00000375299 STOX2Q9P2F5 926 aaPredicted RBP20.17■□□□□ 0.82
UPF3A-202ENST00000375299 PLD2O14939 933 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 SOX14O95416 240 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 FHP07954 510 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 HLA-DMAP28067 261 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 HOXC5Q00444 222 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 BNC1Q01954 994 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 PAQR6Q6TCH4 344 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 TRIM48Q8IWZ4 208 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 PEX5LQ8IYB4 626 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 CADM2Q8N3J6 435 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 PUM2Q8TB72 1066 aaKnown RBP eCLIP20.16■□□□□ 0.82
UPF3A-202ENST00000375299 ENKURQ8TC29 256 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 KIAA1143Q96AT1 154 aaPredicted RBP20.16■□□□□ 0.82
UPF3A-202ENST00000375299 VOPP1Q96AW1 172 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 PKP4Q99569 1192 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 WRAP53Q9BUR4 548 aaKnown RBP20.16■□□□□ 0.82
UPF3A-202ENST00000375299 PLEKHB1Q9UF11 243 aaPredicted RBP20.16■□□□□ 0.82
UPF3A-202ENST00000375299 CD84Q9UIB8 345 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 OR6C70A6NIJ9 312 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 FFAR1O14842 300 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 TPD52L2O43399 206 aaKnown RBP20.16■□□□□ 0.82
UPF3A-202ENST00000375299 IGFBP1P08833 259 aaPredicted RBP20.16■□□□□ 0.82
UPF3A-202ENST00000375299 CLEC2LP0C7M8 214 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 MSL3P1P0C860 447 aa20.16■□□□□ 0.82
UPF3A-202ENST00000375299 ERP29P30040 261 aaKnown RBP20.16■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms