RNA–Protein interactions for RNA: ENST00000356922.5

LIG4-201, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,096 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-201ENST00000356922 ZNF385DQ9H6B1 395 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 ZNF304Q9HCX3 659 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 NECTIN3Q9NQS3 549 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 TRPC4Q9UBN4 977 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 COPG1Q9Y678 874 aaKnown RBP3.79□□□□□ -1.8
LIG4-201ENST00000356922 KMT2BQ9UMN6 2715 aaPredicted RBP3.79□□□□□ -1.8
LIG4-201ENST00000356922 DSCR3O14972 297 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 PCDH7O60245 1069 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 SCN2BO60939 215 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 SCELO95171 688 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 NSA2O95478 260 aaKnown RBP3.79□□□□□ -1.8
LIG4-201ENST00000356922 LAMP1P11279 417 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 TCN2P20062 427 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 GPX3P22352 226 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 ITPKBP27987 946 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 EIF2S3P41091 472 aaKnown RBP3.79□□□□□ -1.8
LIG4-201ENST00000356922 PLIN5Q00G26 463 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 CSTF3Q12996 717 aaKnown RBP3.79□□□□□ -1.8
LIG4-201ENST00000356922 IL10RAQ13651 578 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 MUM1Q2TAK8 710 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 TLDC1Q6P9B6 456 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 MTDHQ86UE4 582 aaKnown RBP3.79□□□□□ -1.8
LIG4-201ENST00000356922 ZC3H7AQ8IWR0 971 aaKnown RBP3.79□□□□□ -1.8
LIG4-201ENST00000356922 GALNT15Q8N3T1 639 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 FBXO27Q8NI29 283 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 DNAJB14Q8TBM8 379 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 COL26A1Q96A83 441 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 VPS33AQ96AX1 596 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 THAP11Q96EK4 314 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 NLNQ9BYT8 704 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 TCF7L2Q9NQB0 619 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 PSD3Q9NYI0 1048 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 MSRB2Q9Y3D2 182 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 NBASA2RRP1 2371 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 SPTA1P02549 2419 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 GNG14A0A1W2PPG7 69 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 VSTM2BA6NLU5 285 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 RGS14O43566 566 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 CELA2AP08217 269 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 ZGLP1P0C6A0 271 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 RBMS1P29558 406 aaKnown RBP3.79□□□□□ -1.8
LIG4-201ENST00000356922 TIA1P31483 386 aaKnown RBP eCLIP3.79□□□□□ -1.8
LIG4-201ENST00000356922 WNT3P56703 355 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 PHEXP78562 749 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 DCDP81605 110 aaKnown RBP3.79□□□□□ -1.8
LIG4-201ENST00000356922 EMX2Q04743 252 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 GABPB1Q06547 395 aaPredicted RBP3.79□□□□□ -1.8
LIG4-201ENST00000356922 RGS1Q08116 209 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 ACSM2AQ08AH3 577 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 SPRED3Q2MJR0 410 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 FAM214AQ32MH5 1076 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 ATP6AP1LQ52LC2 224 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 MANEAQ5SRI9 462 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 ACSM2BQ68CK6 577 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 FAM71E1Q6IPT2 247 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 TRIM40Q6P9F5 258 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 CYP20A1Q6UW02 462 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 CEACAM20Q6UY09 585 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 RNF165Q6ZSG1 346 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 OVCH1Q7RTY7 1134 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 GPR180Q86V85 440 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 TRIM42Q8IWZ5 723 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 C10orf111Q8N326 155 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 ADCY4Q8NFM4 1077 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 TTLQ8NG68 377 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 SUN3Q8TAQ9 357 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 CT55Q8WUE5 264 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 MR1Q95460 341 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 MIEF2Q96C03 454 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 SERPINI1Q99574 410 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 TBCDQ9BTW9 1192 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 DDA1Q9BW61 102 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 ASPSCR1Q9BZE9 553 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 NRSN2Q9GZP1 204 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 VN1R1Q9GZP7 353 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 ANKHQ9HCJ1 492 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 CROTQ9UKG9 612 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 PADI1Q9ULC6 663 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 DOCK10Q96BY6 2186 aa3.79□□□□□ -1.8
LIG4-201ENST00000356922 CACNA1BQ00975 2339 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 IGLV3-12A0A075B6K2 115 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 SLC28A1O00337 649 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 NKX2-8O15522 239 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 CPNE3O75131 537 aaKnown RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 DXOO77932 396 aaKnown RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 CT62P0C5K7 136 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 CDK4P11802 303 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 CALRP27797 417 aaKnown RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 FEN1P39748 380 aaKnown RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 RAP1GDS1P52306 607 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 MAPK12P53778 367 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 MTTPP55157 894 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 STXBP1P61764 594 aaKnown RBP3.78□□□□□ -1.8
LIG4-201ENST00000356922 RHAGQ02094 409 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 FOLH1Q04609 750 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 CLN3Q13286 438 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 DSG2Q14126 1118 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 HERC3Q15034 1050 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 LTB4RQ15722 352 aa3.78□□□□□ -1.8
LIG4-201ENST00000356922 TMEM35AQ53FP2 167 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms