RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 BAIAP2L1Q9UHR4 511 aa20.9■□□□□ 0.94
SDC3-202ENST00000339394 ACPPP15309 386 aa20.89■□□□□ 0.94
SDC3-202ENST00000339394 MAPK1P28482 360 aa20.89■□□□□ 0.94
SDC3-202ENST00000339394 BUD31P41223 144 aaPredicted RBP20.89■□□□□ 0.94
SDC3-202ENST00000339394 DIO3P55073 304 aa20.89■□□□□ 0.94
SDC3-202ENST00000339394 CLN3Q13286 438 aa20.89■□□□□ 0.94
SDC3-202ENST00000339394 DNASE1L3Q13609 305 aa20.89■□□□□ 0.94
SDC3-202ENST00000339394 NDUFAF5Q5TEU4 345 aa20.89■□□□□ 0.94
SDC3-202ENST00000339394 FAM69BQ5VUD6 431 aa20.89■□□□□ 0.94
SDC3-202ENST00000339394 C18orf63Q68DL7 685 aa20.89■□□□□ 0.94
SDC3-202ENST00000339394 TMEM151BQ8IW70 566 aa20.89■□□□□ 0.94
SDC3-202ENST00000339394 PRSS58Q8IYP2 241 aa20.89■□□□□ 0.94
SDC3-202ENST00000339394 ZNF248Q8NDW4 579 aa20.89■□□□□ 0.94
SDC3-202ENST00000339394 TMEM52Q8NDY8 209 aa20.89■□□□□ 0.94
SDC3-202ENST00000339394 SNIP1Q8TAD8 396 aaKnown RBP20.89■□□□□ 0.94
SDC3-202ENST00000339394 PUM2Q8TB72 1066 aaKnown RBP eCLIP20.89■□□□□ 0.94
SDC3-202ENST00000339394 ADAMTS18Q8TE60 1221 aa20.89■□□□□ 0.94
SDC3-202ENST00000339394 EGLN2Q96KS0 407 aa20.89■□□□□ 0.94
SDC3-202ENST00000339394 GPR87Q9BY21 358 aa20.89■□□□□ 0.94
SDC3-202ENST00000339394 SOX17Q9H6I2 414 aaPredicted RBP20.89■□□□□ 0.94
SDC3-202ENST00000339394 LANCL2Q9NS86 450 aa20.89■□□□□ 0.94
SDC3-202ENST00000339394 WDR70Q9NW82 654 aa20.89■□□□□ 0.94
SDC3-202ENST00000339394 NOP53Q9NZM5 478 aaKnown RBP20.89■□□□□ 0.94
SDC3-202ENST00000339394 EIF3LQ9Y262 564 aaKnown RBP20.89■□□□□ 0.94
SDC3-202ENST00000339394 FARSAQ9Y285 508 aaKnown RBP20.89■□□□□ 0.94
SDC3-202ENST00000339394 OR2W5A6NFC9 320 aa20.89■□□□□ 0.93
SDC3-202ENST00000339394 B4GALT2O60909 372 aa20.89■□□□□ 0.93
SDC3-202ENST00000339394 GUCY1B2O75343 617 aa20.89■□□□□ 0.93
SDC3-202ENST00000339394 PRKRAO75569 313 aaKnown RBP20.89■□□□□ 0.93
SDC3-202ENST00000339394 CD63P08962 238 aa20.89■□□□□ 0.93
SDC3-202ENST00000339394 TLX1P31314 330 aaPredicted RBP20.89■□□□□ 0.93
SDC3-202ENST00000339394 HNRNPFP52597 415 aaKnown RBP20.89■□□□□ 0.93
SDC3-202ENST00000339394 RPS15P62841 145 aaKnown RBP20.89■□□□□ 0.93
SDC3-202ENST00000339394 TNFRSF17Q02223 184 aa20.89■□□□□ 0.93
SDC3-202ENST00000339394 KLC1Q07866 573 aa20.89■□□□□ 0.93
SDC3-202ENST00000339394 MED25Q71SY5 747 aa20.89■□□□□ 0.93
SDC3-202ENST00000339394 LIX1Q8N485 282 aa20.89■□□□□ 0.93
SDC3-202ENST00000339394 TSSK3Q96PN8 268 aa20.89■□□□□ 0.93
SDC3-202ENST00000339394 FAM107BQ9H098 131 aa20.89■□□□□ 0.93
SDC3-202ENST00000339394 C14orf105Q9NVL8 296 aa20.89■□□□□ 0.93
SDC3-202ENST00000339394 ASIC5Q9NY37 505 aa20.89■□□□□ 0.93
SDC3-202ENST00000339394 NXT1Q9UKK6 140 aaKnown RBP20.89■□□□□ 0.93
SDC3-202ENST00000339394 FER1L5A0AVI2 2057 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 C1QTNF9BB2RNN3 333 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 AIFM1O95831 613 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 IL3P08700 152 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 ALDOCP09972 364 aaKnown RBP20.88■□□□□ 0.93
SDC3-202ENST00000339394 C1QTNF9P0C862 333 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 G6PDP11413 515 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 DRD4P21917 467 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 JAK1P23458 1154 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 PTPN4P29074 926 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 GSTM5P46439 218 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 MINDY4Q4G0A6 757 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 PARP9Q8IXQ6 854 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 MMP21Q8N119 569 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 TMEM132CQ8N3T6 1108 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 CDC26Q8NHZ8 85 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 KCNE4Q8WWG9 221 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 STON2Q8WXE9 905 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 UCN3Q969E3 161 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 FAM117AQ9C073 453 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 RPF2Q9H7B2 306 aaKnown RBP20.88■□□□□ 0.93
SDC3-202ENST00000339394 GPN2Q9H9Y4 310 aaPredicted RBP20.88■□□□□ 0.93
SDC3-202ENST00000339394 KLHL14Q9P2G3 628 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 KCND3Q9UK17 655 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 TCFL5Q9UL49 500 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 MKL2Q9ULH7 1088 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 PTRH2Q9Y3E5 179 aaKnown RBP20.88■□□□□ 0.93
SDC3-202ENST00000339394 PCDHGA6Q9Y5G7 932 aa20.88■□□□□ 0.93
SDC3-202ENST00000339394 DMXL2Q8TDJ6 3036 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 GLOD5A6NK44 160 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 WASHC1A8K0Z3 465 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 SHOX2O60902 331 aaPredicted RBP20.87■□□□□ 0.93
SDC3-202ENST00000339394 NR2F6P10588 404 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 PRPS2P11908 318 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 RPS18P62269 152 aaKnown RBP20.87■□□□□ 0.93
SDC3-202ENST00000339394 PTGR1Q14914 329 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 HEPACAMQ14CZ8 416 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 MFSD4BQ5TF39 518 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 TMEM198Q66K66 360 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 SPATA19Q7Z5L4 167 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 CLNKQ7Z7G1 428 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 CPLX4Q7Z7G2 160 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 OR2Y1Q8NGV0 311 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 CLHC1Q8NHS4 586 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 KIAA1143Q96AT1 154 aaPredicted RBP20.87■□□□□ 0.93
SDC3-202ENST00000339394 CCDC28BQ9BUN5 200 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 TMEM120AQ9BXJ8 343 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 ACTL8Q9H568 366 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 MYNNQ9NPC7 610 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 IL17BQ9UHF5 180 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 MRPS33Q9Y291 106 aaKnown RBP20.87■□□□□ 0.93
SDC3-202ENST00000339394 PADI2Q9Y2J8 665 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 WBP11Q9Y2W2 641 aaKnown RBP20.87■□□□□ 0.93
SDC3-202ENST00000339394 CFAP47Q6ZTR5 3102 aa20.87■□□□□ 0.93
SDC3-202ENST00000339394 IDSB3KWA1 339 aa20.86■□□□□ 0.93
SDC3-202ENST00000339394 E9PBE3 544 aa20.86■□□□□ 0.93
SDC3-202ENST00000339394 PGRMC2O15173 223 aa20.86■□□□□ 0.93
SDC3-202ENST00000339394 KLHL41O60662 606 aa20.86■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms