RNA–Protein interactions for RNA: ENST00000295550.8

COL6A3-201, Transcript of collagen type VI alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL6A3, Length 10,749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-201ENST00000295550 OR52E4Q8NGH9 312 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 RPLP0P6Q8NHW5 317 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 FCRL3Q96P31 734 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-201ENST00000295550 MTG2Q9H4K7 406 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 CENPMQ9NSP4 180 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 TMEM39AQ9NV64 488 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 ATAD5Q96QE3 1844 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 HPRP00739 348 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 SELPP16109 830 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 MPIP34949 423 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 GPR68Q15743 365 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 MEP1AQ16819 746 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 CES5AQ6NT32 575 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 TLDC1Q6P9B6 456 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 PAQR3Q6TCH7 311 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 ABHD13Q7L211 337 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 FAM46DQ8NEK8 389 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 THRSPQ92748 146 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 RGMAQ96B86 450 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 RDH12Q96NR8 316 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 RANBP9Q96S59 729 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 LRFN1Q9P244 771 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 GRID2O43424 1007 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 MFSD13AQ14CX5 517 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 ANKRD13BQ86YJ7 626 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 SMPDL3BQ92485 455 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 UPF1Q92900 1129 aaKnown RBP eCLIP9.51□□□□□ -0.89
COL6A3-201ENST00000295550 MAPKAP1Q9BPZ7 522 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 HAPLN2Q9GZV7 340 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 CRTAC1Q9NQ79 661 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 GMDSO60547 372 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 RGS9O75916 674 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-201ENST00000295550 PLGP00747 810 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-201ENST00000295550 OR5T1Q8NG75 326 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 NFKBIDQ8NI38 313 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 YIPF4Q9BSR8 244 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 GNG13Q9P2W3 67 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 ERVW-1Q9UQF0 538 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 AP1M2Q9Y6Q5 423 aa9.51□□□□□ -0.89
COL6A3-201ENST00000295550 DOCK10Q96BY6 2186 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 A0A0A6YYH2 397 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 A6NJ64 397 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 IDSP22304 550 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 ATP5A1P25705 553 aaKnown RBP9.5□□□□□ -0.89
COL6A3-201ENST00000295550 CTHP32929 405 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 COQ5Q5HYK3 327 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 FBXL22Q6P050 247 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 OSTM1Q86WC4 334 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 OR8K3Q8NH51 312 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 OR5AK3PQ8NH89 298 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 TMEM121BQ9BXQ6 578 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-201ENST00000295550 IFT52Q9Y366 437 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 TRBC2A0A5B9 178 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 A8MVJ9 347 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 MUSKO15146 869 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 ZNF254O75437 659 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 VIPP01282 170 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 CAMLGP49069 296 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 DSTNP60981 165 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 CYBRD1Q53TN4 286 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 PLEKHG7Q6ZR37 379 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 LAS2Q8IYD9 372 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 ZNF382Q96SR6 550 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 SMOQ99835 787 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 ALKBH4Q9NXW9 302 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 CD84Q9UIB8 345 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 PCDHB14Q9Y5E9 798 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 PCDHGA11Q9Y5H2 935 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 SLC38A8A6NNN8 435 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 FZD9O00144 591 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 EIF1AYO14602 144 aaKnown RBP9.5□□□□□ -0.89
COL6A3-201ENST00000295550 TGM6O95932 706 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 IL3P08700 152 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 CBSLP0DN79 551 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 CBSP35520 551 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 DSC3Q14574 896 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 ZNF678Q5SXM1 525 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 AKR1C8PQ5T2L2 129 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 FUT10Q6P4F1 479 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 LINGO4Q6UY18 593 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 NPAS4Q8IUM7 802 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 ZNF611Q8N823 705 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 PRR11Q96HE9 360 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-201ENST00000295550 ORAI3Q9BRQ5 295 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 TBL1XR1Q9BZK7 514 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 A0A0G2JMP0 313 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 CLIC1O00299 241 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 GK2Q14410 553 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-201ENST00000295550 CDNFQ49AH0 187 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 SLC15A3Q8IY34 581 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 SAMD14Q8IZD0 417 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-201ENST00000295550 PLD6Q8N2A8 252 aaKnown RBP9.5□□□□□ -0.89
COL6A3-201ENST00000295550 OR4M2Q8NGB6 313 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 Q9Y3F1 56 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 IGKV6D-21A0A0A0MT36 114 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 K7EPI3 171 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 PROM1O43490 865 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 H2AFB2P0C5Z0 115 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 ETV4P43268 484 aa9.5□□□□□ -0.89
COL6A3-201ENST00000295550 SPATC1Q76KD6 591 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms