RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 NAE1Q13564 534 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 EFR3AQ14156 821 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 ZNF385BQ569K4 471 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 SHFQ7M4L6 423 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 DEFB128Q7Z7B8 93 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 NLGN4YQ8NFZ3 816 aaPredicted RBP17.56■□□□□ 0.4
UPF1-210ENST00000600689 C1GALT1C1Q96EU7 318 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 SLC35A5Q9BS91 424 aa17.56■□□□□ 0.4
UPF1-210ENST00000600689 NMNAT1Q9HAN9 279 aaPredicted RBP17.56■□□□□ 0.4
UPF1-210ENST00000600689 A0A1B0GVM2 712 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 FAM25AB3EWG3 89 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 FAM25CB3EWG5 89 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 FAM25GB3EWG6 89 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 UGT2B17O75795 530 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 MAN2A2P49641 1150 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 PSPHP78330 225 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 CDH18Q13634 790 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 CCSMST1Q4G0I0 132 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 WDR45BQ5MNZ6 344 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 KRT73Q86Y46 540 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 APCDD1Q8J025 514 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 SIMC1Q8NDZ2 872 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 VPS37AQ8NEZ2 397 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 MTERF3Q96E29 417 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 RNF170Q96K19 258 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 SMAD5Q99717 465 aaKnown RBP17.55■□□□□ 0.4
UPF1-210ENST00000600689 SGK2Q9HBY8 427 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 GPATCH2Q9NW75 528 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 KCTD5Q9NXV2 234 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 KCNE1BA0A087WTH5 132 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 ATN1P54259 1190 aaPredicted RBP17.55■□□□□ 0.4
UPF1-210ENST00000600689 RING1Q06587 406 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 TAF12Q16514 161 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 YIF1BQ5BJH7 314 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 PLET1Q6UQ28 207 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 OTOP2Q7RTS6 562 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 TMCO2Q7Z6W1 182 aaPredicted RBP17.55■□□□□ 0.4
UPF1-210ENST00000600689 DEDD2Q8WXF8 326 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 SAMD11Q96NU1 681 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 ELAC1Q9H777 363 aaKnown RBP17.55■□□□□ 0.4
UPF1-210ENST00000600689 SSR3Q9UNL2 185 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 SNX11Q9Y5W9 270 aa17.55■□□□□ 0.4
UPF1-210ENST00000600689 TRBV4-1A0A0J9YWV2 114 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 NPIPB15A6NHN6 443 aaPredicted RBP17.54■□□□□ 0.4
UPF1-210ENST00000600689 OR10H3O60404 316 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 STC2O76061 302 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 HBQ1P09105 142 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 SDC2P34741 201 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 MTAPQ13126 283 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 DOC2AQ14183 400 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 LARS2Q15031 903 aaKnown RBP17.54■□□□□ 0.4
UPF1-210ENST00000600689 TATDN3Q17R31 274 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 C5orf22Q49AR2 442 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 USP30Q70CQ3 517 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 NPAS4Q8IUM7 802 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 CRIPAKQ8N1N5 446 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 RAD9AQ99638 391 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 TM9SF2Q99805 663 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 VN1R3Q9BXE9 311 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 RNF121Q9H920 327 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 TVP23BQ9NYZ1 205 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 NPAP1Q9NZP6 1156 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 TRBC2A0A5B9 178 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 TLR4O00206 839 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 POLR2EP19388 210 aaKnown RBP17.54■□□□□ 0.4
UPF1-210ENST00000600689 CRISP1P54107 249 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 MEF2AQ02078 507 aaPredicted RBP17.54■□□□□ 0.4
UPF1-210ENST00000600689 VEZF1Q14119 521 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 FRMPD2BQ6IN97 320 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 TYW3Q6IPR3 259 aaKnown RBP17.54■□□□□ 0.4
UPF1-210ENST00000600689 DPY19L3Q6ZPD9 716 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 TIGD4Q8IY51 512 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 MMP21Q8N119 569 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 MAP6Q96JE9 813 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 HHIPL1Q96JK4 782 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 ACER3Q9NUN7 267 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 FAM120CQ9NX05 1096 aaKnown RBP17.54■□□□□ 0.4
UPF1-210ENST00000600689 PADI2Q9Y2J8 665 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 HCN4Q9Y3Q4 1203 aa17.54■□□□□ 0.4
UPF1-210ENST00000600689 SPIN1Q9Y657 262 aaPredicted RBP17.54■□□□□ 0.4
UPF1-210ENST00000600689 SCAMP2O15127 329 aaKnown RBP17.53■□□□□ 0.4
UPF1-210ENST00000600689 NCR1O76036 304 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 DUSP7Q16829 419 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 OR2G6Q5TZ20 316 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 SIGIRRQ6IA17 410 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 SZRD1Q7Z422 152 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 PXYLP1Q8TE99 480 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 MYL12BO14950 172 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 ARHGEF9O43307 516 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 PBLDP30039 288 aaPredicted RBP17.53■□□□□ 0.4
UPF1-210ENST00000600689 SPAM1P38567 509 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 PTPN5P54829 565 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 B4GALNT1Q00973 533 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 LIN28BQ6ZN17 250 aaKnown RBP eCLIP17.53■□□□□ 0.4
UPF1-210ENST00000600689 DEF8Q6ZN54 512 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 LILRA3Q8N6C8 439 aaPredicted RBP17.53■□□□□ 0.4
UPF1-210ENST00000600689 TRIM63Q969Q1 353 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 OMA1Q96E52 524 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 MIXL1Q9H2W2 232 aa17.53■□□□□ 0.4
UPF1-210ENST00000600689 ASAH2Q9NR71 780 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms