RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 FAM57AQ8TBR7 257 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 ASB15Q8WXK1 588 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 TSPAN17Q96FV3 270 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 QRFPRQ96P65 431 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 SERINC2Q96SA4 455 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 VKORC1Q9BQB6 163 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 TMEM79Q9BSE2 394 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 CAPS2Q9BXY5 557 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 OR8D2Q9GZM6 311 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 DERL2Q9GZP9 239 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 TRIM45Q9H8W5 580 aaPredicted RBP16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 CNOT10Q9H9A5 744 aaKnown RBP16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 GRPEL1Q9HAV7 217 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 HPF1Q9NWY4 346 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 COQ3Q9NZJ6 369 aa16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 ZNF490Q9ULM2 529 aaPredicted RBP16.37■□□□□ 0.21
SHKBP1-223ENST00000600552 CCDC188H7C350 402 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 ADAM10O14672 748 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 CLEC3AO75596 197 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 STK16O75716 305 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 PCNAP12004 261 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 POU3F2P20265 443 aaPredicted RBP16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 NR0B1P51843 470 aaKnown RBP16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 MTTPP55157 894 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 TGM3Q08188 693 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 HIST2H2ACQ16777 129 aaPredicted RBP16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 ZNF750Q32MQ0 723 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 CMPK2Q5EBM0 449 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 HIST2H2AA3Q6FI13 130 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 MEX3BQ6ZN04 569 aaKnown RBP16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 CTAGE3PQ8IX95 158 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 ZNF595Q8IYB9 648 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 EID3Q8N140 333 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 TCAIMQ8N3R3 496 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 TMEM132CQ8N3T6 1108 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 CHTF18Q8WVB6 975 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 CDKL2Q92772 493 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 ALOXE3Q9BYJ1 711 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 POPDC3Q9HBV1 291 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 ADAP2Q9NPF8 381 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 RNF112Q9ULX5 631 aa16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 YARS2Q9Y2Z4 477 aaKnown RBP16.36■□□□□ 0.21
SHKBP1-223ENST00000600552 FAM90A27PA6NNH2 459 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 SAP18O00422 153 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 RTCAO00442 366 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 CDK2AP1O14519 115 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 TP73O15350 636 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 PRAMEF4O60810 478 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 OR6B1O95007 311 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 TUBB4AP04350 444 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 CD1DP15813 335 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 MSH2P43246 934 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 KRTAP10-9P60411 292 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 PPIAP62937 165 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 IRF8Q02556 426 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 CALCOCO2Q13137 446 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 CHIT1Q13231 466 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 PDK4Q16654 411 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 PRAMEF9Q5VWM5 478 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 SULT1C3Q6IMI6 304 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 ABHD17CQ6PCB6 329 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 ZNF321PQ8N8H1 164 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 PTCD3Q96EY7 689 aaKnown RBP16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 DMRTA2Q96SC8 542 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 NT5DC2Q9H857 520 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 DEPPQ9NTK1 212 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 GPRC5BQ9NZH0 403 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 HRH3Q9Y5N1 445 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 CSMD1Q96PZ7 3565 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 FBN2P35556 2912 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 EML6Q6ZMW3 1958 aa16.35■□□□□ 0.21
SHKBP1-223ENST00000600552 ZNF407Q9C0G0 2248 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 A0A0G2JMM0 328 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 A0A1W2PPB8 328 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 A0A1W2PRS3 328 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 PINLYPA6NC86 204 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 KIR3DP1A8MWS1 328 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 E7ESA3 106 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 CYR61O00622 381 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 CTNSO60931 367 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 LDB3O75112 727 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 TBX6O95947 436 aaPredicted RBP16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 STMN1P16949 149 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 SSTR2P30874 369 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 HPDP32754 393 aaPredicted RBP16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 SOX3P41225 446 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 RCN2Q14257 317 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 TERF2Q15554 542 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 ELAVL1Q15717 326 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 HSDL2Q6YN16 418 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 RAPH1Q70E73 1250 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 CCDC25Q86WR0 208 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 BBOF1Q8ND07 529 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 PSD4Q8NDX1 1056 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 DOK4Q8TEW6 326 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 PHF10Q8WUB8 498 aaKnown RBP16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 MAPKAP1Q9BPZ7 522 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 ALG9Q9H6U8 611 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 PRDM7Q9NQW5 492 aa16.34■□□□□ 0.21
SHKBP1-223ENST00000600552 DAPP1Q9UN19 280 aa16.34■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms