RNA–Protein interactions for RNA: ENST00000598907.5

SHKBP1-218, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 738 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-218ENST00000598907 EGFL8Q99944 293 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 VKORC1Q9BQB6 163 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 SGPP1Q9BX95 441 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 RAB11FIP5Q9BXF6 653 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 POLDIP3Q9BY77 421 aaKnown RBP13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 CD244Q9BZW8 370 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 KLHL1Q9NR64 748 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 CIDEBQ9UHD4 219 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 PLAGL1Q9UM63 463 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 ASB1Q9Y576 335 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 MAU2Q9Y6X3 613 aa13.1□□□□□ -0.31
SHKBP1-218ENST00000598907 A0A1W2PPV9 198 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 PABPN1LA6NDY0 278 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 ADAM10O14672 748 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 PROM1O43490 865 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 TRIM13O60858 407 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 MLYCDO95822 493 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 ALBP02768 609 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 HEXAP06865 529 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 RPS17P08708 135 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 PIM1P11309 404 aaPredicted RBP13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 COX6A1P12074 109 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 MSX1P28360 303 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 SHMT2P34897 504 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 AGTR2P50052 363 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 HERVK_113P63132 956 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 KLC1Q07866 573 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 FASTKQ14296 549 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 UNC50Q53HI1 259 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 ABHD17BQ5VST6 288 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 NUDCD3Q8IVD9 361 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 TMEM237Q96Q45 408 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 GATA5Q9BWX5 397 aaPredicted RBP13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 ERVK-6Q9BXR3 956 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 ATG10Q9H0Y0 220 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 SLC26A1Q9H2B4 701 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 INTS9Q9NV88 658 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 INTS7Q9NVH2 962 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 OR6C2Q9NZP2 312 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 LRFN1Q9P244 771 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 PLCL2Q9UPR0 1127 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 KLHL20Q9Y2M5 609 aa13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 TNPO3Q9Y5L0 923 aaKnown RBP13.09□□□□□ -0.31
SHKBP1-218ENST00000598907 FBN1P35555 2871 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 A0A0J9YY10 115 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 LRRC14BA6NHZ5 514 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 ZNF839A8K0R7 811 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 STK16O75716 305 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 SIX3O95343 332 aaPredicted RBP13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 SERPINA7P05543 415 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 ITGAMP11215 1152 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 HSPA7P48741 367 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 ST13P50502 369 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 NAA20P61599 178 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 TFF3Q07654 80 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 NAE1Q13564 534 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 FBXO48Q5FWF7 155 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 RAB42Q8N4Z0 105 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 LMNTD1Q8N9Z9 388 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 PPFIBP2Q8ND30 876 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 RAB3IL1Q8TBN0 382 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 ZNF483Q8TF39 744 aaPredicted RBP13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 CKAP2Q8WWK9 683 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 SMPDL3AQ92484 453 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 ESAMQ96AP7 390 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 PAIP2Q9BPZ3 127 aaKnown RBP13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 HES7Q9BYE0 225 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 SPHK1Q9NYA1 384 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 WWOXQ9NZC7 414 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 C3orf18Q9UK00 162 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 PCTPQ9UKL6 214 aa13.08□□□□□ -0.32
SHKBP1-218ENST00000598907 SNRNP200O75643 2136 aaKnown RBP13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 WDR91A4D1P6 747 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 K7EPI3 171 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 PRRG2O14669 202 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 KLF11O14901 512 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 DSCR3O14972 297 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 BMP10O95393 424 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 NPPBP16860 134 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 CCND1P24385 295 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 EEF1DP29692 281 aaKnown RBP13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 PEBP1P30086 187 aaKnown RBP13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 GDF5P43026 501 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 ARSFP54793 590 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 NAGLUP54802 743 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 TBPL1P62380 186 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 PCDH1Q08174 1060 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 ASPHQ12797 758 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 PDK4Q16654 411 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 KRTCAP3Q53RY4 240 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 NDUFAF7Q7L592 441 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 LRRC70Q7Z2Q7 622 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 THOC6Q86W42 341 aaKnown RBP13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 FLVCR1-AS1Q8TAF5 88 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 PYCR2Q96C36 320 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 OR2A14Q96R47 310 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 OR4K3Q96R72 315 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 GPATCH1Q9BRR8 931 aaKnown RBP13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 RNF32Q9H0A6 362 aa13.07□□□□□ -0.32
SHKBP1-218ENST00000598907 GSTO2Q9H4Y5 243 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms