RNA–Protein interactions for RNA: ENST00000576862.5

NUP88-213, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 788 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-213ENST00000576862 H3BMM5 538 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 MPHOSPH10O00566 681 aaKnown RBP4.32□□□□□ -1.72
NUP88-213ENST00000576862 SURF4O15260 269 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 APOA4P06727 396 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 FAM86B2P0C5J1 330 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 SPP1P10451 314 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 SFTPCP11686 197 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 PDGFRAP16234 1089 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 ADRA2CP18825 462 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 NAGLUP54802 743 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 SH3BGRP55822 239 aaPredicted RBP4.32□□□□□ -1.72
NUP88-213ENST00000576862 PTENP60484 403 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 TCTEX1D4Q5JR98 221 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 LRRC73Q5JTD7 316 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 TTC27Q6P3X3 843 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 TRAT1Q6PIZ9 186 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 PRSS55Q6UWB4 352 aaPredicted RBP4.32□□□□□ -1.72
NUP88-213ENST00000576862 CCBE1Q6UXH8 406 aaPredicted RBP4.32□□□□□ -1.72
NUP88-213ENST00000576862 CHMP1BQ7LBR1 199 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 C5orf24Q7Z6I8 188 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 ZER1Q7Z7L7 766 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 Q8N377 158 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 MNS1Q8NEH6 495 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 ATP8B4Q8TF62 1192 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 HEXDCQ8WVB3 486 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 NXPE2Q96DL1 559 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 SIPA1Q96FS4 1042 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 COG3Q96JB2 828 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 RNF121Q9H920 327 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 THAP10Q9P2Z0 257 aaPredicted RBP4.32□□□□□ -1.72
NUP88-213ENST00000576862 BLOC1S6Q9UL45 172 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 KNDC1Q76NI1 1749 aa4.32□□□□□ -1.72
NUP88-213ENST00000576862 XRN1Q8IZH2 1706 aaKnown RBP4.32□□□□□ -1.72
NUP88-213ENST00000576862 IQSEC2Q5JU85 1478 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 OVOS2A0A0J9YW53 1432 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 OVOS2Q6IE36 1432 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 ADGRL3Q9HAR2 1447 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 MYH14Q7Z406 1995 aaKnown RBP4.31□□□□□ -1.72
NUP88-213ENST00000576862 NEDD4P46934 1319 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 A0A087WZ39 114 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 A0A1B0GVY2 172 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 TSPY2A6NKD2 308 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 SHISA7A6NL88 538 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 PRSS46E5RG02 174 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 K7EQD1 137 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 SLC1A7O00341 560 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 RTCAO00442 366 aaKnown RBP4.31□□□□□ -1.72
NUP88-213ENST00000576862 B3GALNT1O75752 331 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 BBOX1O75936 387 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 NXPH4O95158 308 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 GBAP04062 536 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 YES1P07947 543 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 TSPY3P0CV98 308 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 TSPY8P0CW00 308 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 NEFHP12036 1026 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 SELEP16581 610 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 EDNRAP25101 427 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 PSMB4P28070 264 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 TLX1P31314 330 aaPredicted RBP4.31□□□□□ -1.72
NUP88-213ENST00000576862 HSPA2P54652 639 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 CLDN17P56750 224 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 HSD17B7P56937 341 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 TSPY1Q01534 308 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 PAX8Q06710 450 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 RAPSNQ13702 412 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 TAF3Q5VWG9 929 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 ZFAND4Q86XD8 727 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 IQCA1Q86XH1 822 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 VSIG1Q86XK7 387 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 METTL4Q8N3J2 472 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 CARNMT1Q8N4J0 409 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 LRRC15Q8TF66 581 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 ST6GALNAC6Q969X2 333 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 SPATA17Q96L03 361 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 TSGA13Q96PP4 275 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 PLEKHF1Q96S99 279 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 PARLQ9H300 379 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 SUDS3Q9H7L9 328 aaPredicted RBP4.31□□□□□ -1.72
NUP88-213ENST00000576862 LMAN1LQ9HAT1 526 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 IARS2Q9NSE4 1012 aaKnown RBP4.31□□□□□ -1.72
NUP88-213ENST00000576862 RABL2AQ9UBK7 228 aaPredicted RBP4.31□□□□□ -1.72
NUP88-213ENST00000576862 LNPEPQ9UIQ6 1025 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 ANAPC5Q9UJX4 755 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 KLK4Q9Y5K2 254 aa4.31□□□□□ -1.72
NUP88-213ENST00000576862 SIPA1L2Q9P2F8 1722 aaPredicted RBP4.31□□□□□ -1.72
NUP88-213ENST00000576862 ZNF142P52746 1687 aaPredicted RBP4.3□□□□□ -1.72
NUP88-213ENST00000576862 TFECO14948 347 aaPredicted RBP4.3□□□□□ -1.72
NUP88-213ENST00000576862 FCGR3BO75015 233 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 QDPRP09417 244 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 LBPP18428 481 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 ZNF10P21506 573 aaPredicted RBP4.3□□□□□ -1.72
NUP88-213ENST00000576862 EVCP57679 992 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 DHODHQ02127 395 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 KRT71Q3SY84 523 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 ODF2Q5BJF6 829 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 ATP1A1-AS1Q5TC04 95 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 FAM91A1Q658Y4 838 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 IRGCQ6NXR0 463 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 FUT10Q6P4F1 479 aa4.3□□□□□ -1.72
NUP88-213ENST00000576862 CNSTQ6PJW8 725 aa4.3□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms