RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 TMEM178AQ8NBL3 297 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 B3GNT7Q8NFL0 401 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 OR7G3Q8NG95 312 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 THAP3Q8WTV1 239 aaPredicted RBP19.38■□□□□ 0.69
CLN3-219ENST00000565778 UBTD2Q8WUN7 234 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 FMO2Q99518 471 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 TBCDQ9BTW9 1192 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 MS4A8Q9BY19 250 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 CDC42EP4Q9H3Q1 356 aaKnown RBP19.38■□□□□ 0.69
CLN3-219ENST00000565778 FBXW2Q9UKT8 454 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 IKBKGQ9Y6K9 419 aa19.38■□□□□ 0.69
CLN3-219ENST00000565778 CPAMD8Q8IZJ3 1885 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 TRBV11-1A0A0K0K1C0 115 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 CDK2AP1O14519 115 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 FCHO1O14526 889 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 CTNSO60931 367 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 CLDN1O95832 211 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 IFNA16P05015 189 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 INHBAP08476 426 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 PPP2R1BP30154 601 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 CYB561P49447 251 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 MLF1P58340 268 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 PCDH1Q08174 1060 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 E2F2Q14209 437 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 GLE1Q53GS7 698 aaKnown RBP19.37■□□□□ 0.69
CLN3-219ENST00000565778 ZNF468Q5VIY5 522 aaPredicted RBP19.37■□□□□ 0.69
CLN3-219ENST00000565778 GALNTL5Q7Z4T8 443 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 UBE3DQ7Z6J8 389 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 FJX1Q86VR8 437 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 LAS2Q8IYD9 372 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 CMTM7Q96FZ5 175 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 SCMH1Q96GD3 660 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 KCMF1Q9P0J7 381 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 CPSF2Q9P2I0 782 aaKnown RBP19.37■□□□□ 0.69
CLN3-219ENST00000565778 ADGRE2Q9UHX3 823 aa19.37■□□□□ 0.69
CLN3-219ENST00000565778 MYOCOSA0A1B0GUC4 107 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 SAP18O00422 153 aaKnown RBP19.36■□□□□ 0.69
CLN3-219ENST00000565778 RTCAO00442 366 aaKnown RBP19.36■□□□□ 0.69
CLN3-219ENST00000565778 NEURL1O76050 574 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 ALDOAP04075 364 aaKnown RBP19.36■□□□□ 0.69
CLN3-219ENST00000565778 TUBB4AP04350 444 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 ATP5A1P25705 553 aaKnown RBP19.36■□□□□ 0.69
CLN3-219ENST00000565778 SERPINB1P30740 379 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 ALDH18A1P54886 795 aaKnown RBP19.36■□□□□ 0.69
CLN3-219ENST00000565778 STX4Q12846 297 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 DDX39BQ13838 428 aaKnown RBP19.36■□□□□ 0.69
CLN3-219ENST00000565778 SETDB1Q15047 1291 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 C1QL3Q5VWW1 255 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 GRHL2Q6ISB3 625 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 TMEM132CQ8N3T6 1108 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 ACOT4Q8N9L9 421 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 FAM98AQ8NCA5 519 aaKnown RBP19.36■□□□□ 0.69
CLN3-219ENST00000565778 APCDD1LQ8NCL9 501 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 SLC44A1Q8WWI5 657 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 CSF3RQ99062 836 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 MAPKAP1Q9BPZ7 522 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 CCDC77Q9BR77 488 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 ALOXE3Q9BYJ1 711 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 OR51B5Q9H339 312 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 ACTR8Q9H981 624 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 LYRM4Q9HD34 91 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 CLCA3PQ9Y6N3 262 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 SPACA6W5XKT8 324 aa19.36■□□□□ 0.69
CLN3-219ENST00000565778 TRGV8A0A0C4DH27 118 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 LRRC14BA6NHZ5 514 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 POC1B-GALNT4F8VUJ3 575 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 TGFBR3LH3BV60 316 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 TNNI3P19429 210 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 COL8A1P27658 744 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 SSR2P43308 183 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 ALDH6A1Q02252 535 aaKnown RBP19.35■□□□□ 0.69
CLN3-219ENST00000565778 RBPJQ06330 500 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 NAA30Q147X3 362 aaPredicted RBP19.35■□□□□ 0.69
CLN3-219ENST00000565778 TERF2Q15554 542 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 DEPDC1Q5TB30 811 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 KHDRBS2Q5VWX1 349 aaKnown RBP19.35■□□□□ 0.69
CLN3-219ENST00000565778 LIPJQ5W064 366 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 ZNF793Q6ZN11 406 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 PNPLA5Q7Z6Z6 429 aaPredicted RBP19.35■□□□□ 0.69
CLN3-219ENST00000565778 UHMK1Q8TAS1 419 aaKnown RBP19.35■□□□□ 0.69
CLN3-219ENST00000565778 NCLNQ969V3 563 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 TMEM125Q96AQ2 219 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 VMP1Q96GC9 406 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 GPR78Q96P69 363 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 FUT8Q9BYC5 575 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 ADAP2Q9NPF8 381 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 PCDHGA11Q9Y5H2 935 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 CLDN16Q9Y5I7 305 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 TNPO3Q9Y5L0 923 aaKnown RBP19.35■□□□□ 0.69
CLN3-219ENST00000565778 ICE1Q9Y2F5 2266 aa19.35■□□□□ 0.69
CLN3-219ENST00000565778 HIVEP3Q5T1R4 2406 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 SYNDIG1LA6NDD5 238 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 SLC25A12O75746 678 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 WISP2O76076 250 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 MLYCDO95822 493 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 HIST1H1TP22492 207 aaPredicted RBP19.34■□□□□ 0.69
CLN3-219ENST00000565778 CPN2P22792 545 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 SERPINB9P50453 376 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 HLCSP50747 726 aa19.34■□□□□ 0.69
CLN3-219ENST00000565778 RAP1GDS1P52306 607 aa19.34■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms