RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CSGALNACT1Q8TDX6 532 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 KAT2AQ92830 837 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 MSANTD3Q96H12 275 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 OPALINQ96PE5 141 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 PRR14Q9BWN1 585 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 FAM83DQ9H4H8 585 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 ANKHQ9HCJ1 492 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 KCTD5Q9NXV2 234 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 ZNF224Q9NZL3 707 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 CCDC59Q9P031 241 aaKnown RBP10.86□□□□□ -0.67
LDLR-208ENST00000558518 NDRG2Q9UN36 371 aaKnown RBP10.86□□□□□ -0.67
LDLR-208ENST00000558518 PCDHB8Q9UN66 801 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 SNX11Q9Y5W9 270 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 ALG5Q9Y673 324 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 ALPK2Q86TB3 2170 aa10.86□□□□□ -0.67
LDLR-208ENST00000558518 MTMR11A4FU01 709 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 NPIPB15A6NHN6 443 aaPredicted RBP10.85□□□□□ -0.67
LDLR-208ENST00000558518 B4DXG7 233 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 HPGDSO60760 199 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 CSO75390 466 aaKnown RBP10.85□□□□□ -0.67
LDLR-208ENST00000558518 NME6O75414 186 aaPredicted RBP10.85□□□□□ -0.67
LDLR-208ENST00000558518 CSTF2P33240 577 aaKnown RBP eCLIP10.85□□□□□ -0.67
LDLR-208ENST00000558518 OR3A3P47888 321 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 SMSP52788 366 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 CRISP1P54107 249 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 LSM11P83369 360 aaKnown RBP eCLIP10.85□□□□□ -0.67
LDLR-208ENST00000558518 POU4F3Q15319 338 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 P2RY14Q15391 338 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 HECTD3Q5T447 861 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 TRIM69Q86WT6 500 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 NTMT1Q9BV86 223 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 SLC29A3Q9BZD2 475 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 POLR2J3Q9H1A7 115 aaKnown RBP10.85□□□□□ -0.67
LDLR-208ENST00000558518 PPIL3Q9H2H8 161 aaKnown RBP10.85□□□□□ -0.67
LDLR-208ENST00000558518 HHATLQ9HCP6 504 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 TMPRSS11EQ9UL52 423 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 SATB2Q9UPW6 733 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 ERVW-1Q9UQF0 538 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 HCN4Q9Y3Q4 1203 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 PCDHGA2Q9Y5H1 932 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 GREB1Q4ZG55 1949 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 LTBP4Q8N2S1 1624 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 A0A1B0GVM2 712 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 NUPL2O15504 423 aaKnown RBP10.85□□□□□ -0.67
LDLR-208ENST00000558518 IFNW1P05000 195 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 SYPP08247 313 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 CSF3P09919 207 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 ZNF865P0CJ78 1059 aaPredicted RBP10.85□□□□□ -0.67
LDLR-208ENST00000558518 SPAM1P38567 509 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 MAP4K2Q12851 820 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 MAP2K5Q13163 448 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 LCN1P1Q5VSP4 162 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 USP45Q70EL2 814 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 ZNF367Q7RTV3 350 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 TAS1R1Q7RTX1 841 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 NXPE1Q8N323 547 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 DNAJC5GQ8N7S2 189 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 FLCNQ8NFG4 579 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 KLHL6Q8WZ60 621 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 SLC9A6Q92581 669 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 MRPS31Q92665 395 aaKnown RBP10.85□□□□□ -0.67
LDLR-208ENST00000558518 USP7Q93009 1102 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 LOC105378220A0A1B0GUY1 285 aaPredicted RBP10.85□□□□□ -0.67
LDLR-208ENST00000558518 SLC38A8A6NNN8 435 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 RTCAO00442 366 aaKnown RBP10.85□□□□□ -0.67
LDLR-208ENST00000558518 RGS13O14921 159 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 OR56A5P0C7T3 313 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 MYL12AP19105 171 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 RNF144AP50876 292 aaPredicted RBP10.85□□□□□ -0.67
LDLR-208ENST00000558518 CRYBA2P53672 197 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 EFR3AQ14156 821 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 SLC5A12Q1EHB4 618 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 RTP2Q5QGT7 225 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 BEST4Q8NFU0 473 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 LRRC20Q8TCA0 184 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 FBLIM1Q8WUP2 373 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 NELL2Q99435 816 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 TTTY10Q9BZA0 68 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 KLHL1Q9NR64 748 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 ING3Q9NXR8 418 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 SCN4AP35499 1836 aa10.85□□□□□ -0.67
LDLR-208ENST00000558518 C5orf42Q9H799 3197 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 CIB4A0PJX0 185 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 TMEM202A6NGA9 273 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 CD8B2A6NJW9 211 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 KLK1P06870 262 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 CD8BP10966 210 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 AOAHP28039 575 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 XKP51811 444 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 CTBP2P56545 445 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 CSNK2BP67870 215 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 PIN1Q13526 163 aaPredicted RBP10.84□□□□□ -0.67
LDLR-208ENST00000558518 LARS2Q15031 903 aaKnown RBP10.84□□□□□ -0.67
LDLR-208ENST00000558518 ZNF385BQ569K4 471 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 GPRC6AQ5T6X5 926 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 FRMPD2BQ6IN97 320 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 NCEH1Q6PIU2 408 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 C16orf62Q7Z3J2 963 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 VWA5B2Q8N398 1253 aa10.84□□□□□ -0.67
LDLR-208ENST00000558518 ZNF366Q8N895 744 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms