RNA–Protein interactions for RNA: ENST00000555543.1

VTI1B-205, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 2

Gene VTI1B, Length 718 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-205ENST00000555543 KIF2BQ8N4N8 673 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 ACOT4Q8N9L9 421 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 HAS2Q92819 552 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 CMTM7Q96FZ5 175 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 MAPKAP1Q9BPZ7 522 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 TBCDQ9BTW9 1192 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 KCNK13Q9HB14 408 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 PRTFDC1Q9NRG1 225 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 TMCO1Q9UM00 188 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 VPS4AQ9UN37 437 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 TSC22D4Q9Y3Q8 395 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 PCDHGA11Q9Y5H2 935 aa19.21■□□□□ 0.67
VTI1B-205ENST00000555543 HECTD1Q9ULT8 2610 aa19.21■□□□□ 0.66
VTI1B-205ENST00000555543 A0A1B0GTL3 188 aa19.2■□□□□ 0.66
VTI1B-205ENST00000555543 GOLGA8RI6L899 631 aa19.2■□□□□ 0.66
VTI1B-205ENST00000555543 RPS17P08708 135 aaKnown RBP19.2■□□□□ 0.66
VTI1B-205ENST00000555543 HIST1H1TP22492 207 aaPredicted RBP19.2■□□□□ 0.66
VTI1B-205ENST00000555543 ST13P50502 369 aaKnown RBP19.2■□□□□ 0.66
VTI1B-205ENST00000555543 RPS13P62277 151 aaKnown RBP19.2■□□□□ 0.66
VTI1B-205ENST00000555543 TRAF3Q13114 568 aa19.2■□□□□ 0.66
VTI1B-205ENST00000555543 DEPDC1Q5TB30 811 aa19.2■□□□□ 0.66
VTI1B-205ENST00000555543 FAM219BQ5XKK7 198 aa19.2■□□□□ 0.66
VTI1B-205ENST00000555543 CHSY3Q70JA7 882 aa19.2■□□□□ 0.66
VTI1B-205ENST00000555543 CLNKQ7Z7G1 428 aa19.2■□□□□ 0.66
VTI1B-205ENST00000555543 CRLF3Q8IUI8 442 aa19.2■□□□□ 0.66
VTI1B-205ENST00000555543 BEST3Q8N1M1 668 aa19.2■□□□□ 0.66
VTI1B-205ENST00000555543 SRFBP1Q8NEF9 429 aaKnown RBP19.2■□□□□ 0.66
VTI1B-205ENST00000555543 ARMC2Q8NEN0 867 aa19.2■□□□□ 0.66
VTI1B-205ENST00000555543 NFAM1Q8NET5 270 aaPredicted RBP19.2■□□□□ 0.66
VTI1B-205ENST00000555543 OR1N1Q8NGS0 311 aa19.2■□□□□ 0.66
VTI1B-205ENST00000555543 WDR20Q8TBZ3 569 aa19.2■□□□□ 0.66
VTI1B-205ENST00000555543 ELP5Q8TE02 316 aa19.2■□□□□ 0.66
VTI1B-205ENST00000555543 ADAMTS18Q8TE60 1221 aa19.2■□□□□ 0.66
VTI1B-205ENST00000555543 BARD1Q99728 777 aaKnown RBP19.2■□□□□ 0.66
VTI1B-205ENST00000555543 RNF32Q9H0A6 362 aa19.2■□□□□ 0.66
VTI1B-205ENST00000555543 TMEM216Q9P0N5 145 aa19.2■□□□□ 0.66
VTI1B-205ENST00000555543 TBK1Q9UHD2 729 aa19.2■□□□□ 0.66
VTI1B-205ENST00000555543 COPG1Q9Y678 874 aaKnown RBP19.2■□□□□ 0.66
VTI1B-205ENST00000555543 IQANK1A0A1B0GTG1 560 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 CLEC18AA5D8T8 446 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 FOXO6A8MYZ6 492 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 PLPP1O14494 284 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 ETHE1O95571 254 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 SSR2P43308 183 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 NEK2P51955 445 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 HSD17B7P56937 341 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 SLC13A2Q13183 592 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 MRPL49Q13405 166 aaKnown RBP19.19■□□□□ 0.66
VTI1B-205ENST00000555543 ZRSR2Q15696 482 aaKnown RBP19.19■□□□□ 0.66
VTI1B-205ENST00000555543 ACER2Q5QJU3 275 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 CLEC18BQ6UXF7 455 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 ZNF595Q8IYB9 648 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 CLEC18CQ8NCF0 446 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 ZNF717Q9BY31 904 aaPredicted RBP19.19■□□□□ 0.66
VTI1B-205ENST00000555543 ROGDIQ9GZN7 287 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 LYRM4Q9HD34 91 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 SEMA4BQ9NPR2 832 aaPredicted RBP19.19■□□□□ 0.66
VTI1B-205ENST00000555543 STMN3Q9NZ72 180 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 ADGRE2Q9UHX3 823 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 TEKT2Q9UIF3 430 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 MRPS33Q9Y291 106 aaKnown RBP19.19■□□□□ 0.66
VTI1B-205ENST00000555543 PTPN13Q12923 2485 aa19.19■□□□□ 0.66
VTI1B-205ENST00000555543 MYOCOSA0A1B0GUC4 107 aa19.18■□□□□ 0.66
VTI1B-205ENST00000555543 PPP6CO00743 305 aa19.18■□□□□ 0.66
VTI1B-205ENST00000555543 CLDN9O95484 217 aa19.18■□□□□ 0.66
VTI1B-205ENST00000555543 ARL1P40616 181 aaPredicted RBP19.18■□□□□ 0.66
VTI1B-205ENST00000555543 CCNG1P51959 295 aa19.18■□□□□ 0.66
VTI1B-205ENST00000555543 NR6A1Q15406 480 aa19.18■□□□□ 0.66
VTI1B-205ENST00000555543 AP5B1Q2VPB7 878 aa19.18■□□□□ 0.66
VTI1B-205ENST00000555543 OR4C11Q6IEV9 310 aa19.18■□□□□ 0.66
VTI1B-205ENST00000555543 ZNF483Q8TF39 744 aaPredicted RBP19.18■□□□□ 0.66
VTI1B-205ENST00000555543 UBLCP1Q8WVY7 318 aaPredicted RBP19.18■□□□□ 0.66
VTI1B-205ENST00000555543 ATP6V1E2Q96A05 226 aa19.18■□□□□ 0.66
VTI1B-205ENST00000555543 REPS1Q96D71 796 aa19.18■□□□□ 0.66
VTI1B-205ENST00000555543 ZNF354BQ96LW1 612 aa19.18■□□□□ 0.66
VTI1B-205ENST00000555543 NTMT1Q9BV86 223 aa19.18■□□□□ 0.66
VTI1B-205ENST00000555543 TRAV17A0A0B4J275 112 aa19.17■□□□□ 0.66
VTI1B-205ENST00000555543 A0A1W2PPM1 405 aa19.17■□□□□ 0.66
VTI1B-205ENST00000555543 OR5H15A6NDH6 313 aa19.17■□□□□ 0.66
VTI1B-205ENST00000555543 CLDN4O14493 209 aa19.17■□□□□ 0.66
VTI1B-205ENST00000555543 MYO1DO94832 1006 aa19.17■□□□□ 0.66
VTI1B-205ENST00000555543 PYGBP11216 843 aa19.17■□□□□ 0.66
VTI1B-205ENST00000555543 TSPAN8P19075 237 aa19.17■□□□□ 0.66
VTI1B-205ENST00000555543 SLCO1A2P46721 670 aa19.17■□□□□ 0.66
VTI1B-205ENST00000555543 RAP1GDS1P52306 607 aa19.17■□□□□ 0.66
VTI1B-205ENST00000555543 APCDD1LQ8NCL9 501 aa19.17■□□□□ 0.66
VTI1B-205ENST00000555543 GRHL3Q8TE85 626 aa19.17■□□□□ 0.66
VTI1B-205ENST00000555543 RGMAQ96B86 450 aa19.17■□□□□ 0.66
VTI1B-205ENST00000555543 C1QTNF3Q9BXJ4 246 aa19.17■□□□□ 0.66
VTI1B-205ENST00000555543 SLC29A3Q9BZD2 475 aa19.17■□□□□ 0.66
VTI1B-205ENST00000555543 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP19.17■□□□□ 0.66
VTI1B-205ENST00000555543 PNO1Q9NRX1 252 aaKnown RBP19.17■□□□□ 0.66
VTI1B-205ENST00000555543 FBXW2Q9UKT8 454 aa19.17■□□□□ 0.66
VTI1B-205ENST00000555543 DLX3O60479 287 aa19.16■□□□□ 0.66
VTI1B-205ENST00000555543 EEDO75530 441 aaKnown RBP19.16■□□□□ 0.66
VTI1B-205ENST00000555543 CDH13P55290 713 aa19.16■□□□□ 0.66
VTI1B-205ENST00000555543 VSNL1P62760 191 aa19.16■□□□□ 0.66
VTI1B-205ENST00000555543 PHEXP78562 749 aa19.16■□□□□ 0.66
VTI1B-205ENST00000555543 RCN2Q14257 317 aa19.16■□□□□ 0.66
VTI1B-205ENST00000555543 MEP1AQ16819 746 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms