RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 MRM1Q6IN84 353 aaKnown RBP20.01■□□□□ 0.79
VPS29-206ENST00000549578 UNQ6494/PRO21346Q6UXR6 183 aa20.01■□□□□ 0.79
VPS29-206ENST00000549578 RIPOR1Q6ZS17 1223 aa20.01■□□□□ 0.79
VPS29-206ENST00000549578 SHISA6Q6ZSJ9 500 aa20.01■□□□□ 0.79
VPS29-206ENST00000549578 VASH2Q86V25 355 aa20.01■□□□□ 0.79
VPS29-206ENST00000549578 ZC3H7AQ8IWR0 971 aaKnown RBP20.01■□□□□ 0.79
VPS29-206ENST00000549578 EFCAB3Q8N7B9 438 aa20.01■□□□□ 0.79
VPS29-206ENST00000549578 ENDOVQ8N8Q3 282 aaKnown RBP20.01■□□□□ 0.79
VPS29-206ENST00000549578 FAM47BQ8NA70 645 aa20.01■□□□□ 0.79
VPS29-206ENST00000549578 ZNF248Q8NDW4 579 aa20.01■□□□□ 0.79
VPS29-206ENST00000549578 STT3BQ8TCJ2 826 aa20.01■□□□□ 0.79
VPS29-206ENST00000549578 ZNF317Q96PQ6 595 aaPredicted RBP20.01■□□□□ 0.79
VPS29-206ENST00000549578 CSF3RQ99062 836 aa20.01■□□□□ 0.79
VPS29-206ENST00000549578 CLK4Q9HAZ1 481 aaKnown RBP20.01■□□□□ 0.79
VPS29-206ENST00000549578 LYRM4Q9HD34 91 aa20.01■□□□□ 0.79
VPS29-206ENST00000549578 MCM8Q9UJA3 840 aa20.01■□□□□ 0.79
VPS29-206ENST00000549578 IGF2RP11717 2491 aa20■□□□□ 0.79
VPS29-206ENST00000549578 IGLV3-12A0A075B6K2 115 aa20■□□□□ 0.79
VPS29-206ENST00000549578 GNG14A0A1W2PPG7 69 aa20■□□□□ 0.79
VPS29-206ENST00000549578 CDC123O75794 336 aaPredicted RBP20■□□□□ 0.79
VPS29-206ENST00000549578 BMP10O95393 424 aa20■□□□□ 0.79
VPS29-206ENST00000549578 ALBP02768 609 aa20■□□□□ 0.79
VPS29-206ENST00000549578 EPHA3P29320 983 aa20■□□□□ 0.79
VPS29-206ENST00000549578 RAB38P57729 211 aa20■□□□□ 0.79
VPS29-206ENST00000549578 RPS18P62269 152 aaKnown RBP20■□□□□ 0.79
VPS29-206ENST00000549578 OCA2Q04671 838 aa20■□□□□ 0.79
VPS29-206ENST00000549578 SRSF6Q13247 344 aaKnown RBP20■□□□□ 0.79
VPS29-206ENST00000549578 NOXRED1Q6NXP6 359 aa20■□□□□ 0.79
VPS29-206ENST00000549578 GALNT18Q6P9A2 607 aa20■□□□□ 0.79
VPS29-206ENST00000549578 GPR180Q86V85 440 aa20■□□□□ 0.79
VPS29-206ENST00000549578 KCNE4Q8WWG9 221 aa20■□□□□ 0.79
VPS29-206ENST00000549578 TBC1D20Q96BZ9 403 aa20■□□□□ 0.79
VPS29-206ENST00000549578 C1orf50Q9BV19 199 aa20■□□□□ 0.79
VPS29-206ENST00000549578 SLC26A1Q9H2B4 701 aa20■□□□□ 0.79
VPS29-206ENST00000549578 SOX17Q9H6I2 414 aaPredicted RBP20■□□□□ 0.79
VPS29-206ENST00000549578 NPHS2Q9NP85 383 aa20■□□□□ 0.79
VPS29-206ENST00000549578 SIRT5Q9NXA8 310 aa20■□□□□ 0.79
VPS29-206ENST00000549578 DLGAP4Q9Y2H0 992 aa20■□□□□ 0.79
VPS29-206ENST00000549578 ATG4BQ9Y4P1 393 aa20■□□□□ 0.79
VPS29-206ENST00000549578 ASB4Q9Y574 426 aa20■□□□□ 0.79
VPS29-206ENST00000549578 CCDC88CQ9P219 2028 aa20■□□□□ 0.79
VPS29-206ENST00000549578 CHD8Q9HCK8 2581 aa20■□□□□ 0.79
VPS29-206ENST00000549578 SCN2AQ99250 2005 aa19.99■□□□□ 0.79
VPS29-206ENST00000549578 C21orf140B9A014 251 aa19.99■□□□□ 0.79
VPS29-206ENST00000549578 PSMD12O00232 456 aaPredicted RBP19.99■□□□□ 0.79
VPS29-206ENST00000549578 DIAPH2O60879 1101 aa19.99■□□□□ 0.79
VPS29-206ENST00000549578 MYO1DO94832 1006 aa19.99■□□□□ 0.79
VPS29-206ENST00000549578 ANXA4P09525 319 aaPredicted RBP19.99■□□□□ 0.79
VPS29-206ENST00000549578 RAB40ALP0C0E4 278 aa19.99■□□□□ 0.79
VPS29-206ENST00000549578 ZGLP1P0C6A0 271 aa19.99■□□□□ 0.79
VPS29-206ENST00000549578 ALOX15P16050 662 aaPredicted RBP19.99■□□□□ 0.79
VPS29-206ENST00000549578 AQP5P55064 265 aa19.99■□□□□ 0.79
VPS29-206ENST00000549578 GNGT1P63211 74 aa19.99■□□□□ 0.79
VPS29-206ENST00000549578 FNDC5Q8NAU1 212 aa19.99■□□□□ 0.79
VPS29-206ENST00000549578 MIEF2Q96C03 454 aa19.99■□□□□ 0.79
VPS29-206ENST00000549578 METTL2AQ96IZ6 378 aaKnown RBP19.99■□□□□ 0.79
VPS29-206ENST00000549578 SPSB2Q99619 263 aa19.99■□□□□ 0.79
VPS29-206ENST00000549578 GPN2Q9H9Y4 310 aaPredicted RBP19.99■□□□□ 0.79
VPS29-206ENST00000549578 LYARQ9NX58 379 aaKnown RBP19.99■□□□□ 0.79
VPS29-206ENST00000549578 IL17BQ9UHF5 180 aa19.99■□□□□ 0.79
VPS29-206ENST00000549578 FARSAQ9Y285 508 aaKnown RBP19.99■□□□□ 0.79
VPS29-206ENST00000549578 ACACAQ13085 2346 aa19.99■□□□□ 0.79
VPS29-206ENST00000549578 OR2W5A6NFC9 320 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 VSTM2BA6NLU5 285 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 B4GALT2O60909 372 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 PRKRAO75569 313 aaKnown RBP19.98■□□□□ 0.79
VPS29-206ENST00000549578 KLF7O75840 302 aaPredicted RBP19.98■□□□□ 0.79
VPS29-206ENST00000549578 FHP07954 510 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 PRR35P0CG20 571 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 LIFP15018 202 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 CPN2P22792 545 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 LSP1P33241 339 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 HNRNPFP52597 415 aaKnown RBP19.98■□□□□ 0.79
VPS29-206ENST00000549578 RPS15P62841 145 aaKnown RBP19.98■□□□□ 0.79
VPS29-206ENST00000549578 MFSD4BQ5TF39 518 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 CGB2Q6NT52 195 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 EPGNQ6UW88 154 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 LARP4Q71RC2 724 aaKnown RBP eCLIP19.98■□□□□ 0.799e-6■■□□□ 12.1
VPS29-206ENST00000549578 LAPTM4BQ86VI4 370 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 TMEM52Q8NDY8 209 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 RFWD2Q8NHY2 731 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 KIAA1143Q96AT1 154 aaPredicted RBP19.98■□□□□ 0.79
VPS29-206ENST00000549578 FCRL1Q96LA6 429 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 TGIF2Q9GZN2 237 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 ACTL8Q9H568 366 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 WDR54Q9H977 334 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 LANCL2Q9NS86 450 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 C14orf105Q9NVL8 296 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 TEX10Q9NXF1 929 aaPredicted RBP19.98■□□□□ 0.79
VPS29-206ENST00000549578 PHF11Q9UIL8 331 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 TMED5Q9Y3A6 229 aa19.98■□□□□ 0.79
VPS29-206ENST00000549578 PTRH2Q9Y3E5 179 aaKnown RBP19.98■□□□□ 0.79
VPS29-206ENST00000549578 MRPS18BQ9Y676 258 aaKnown RBP19.98■□□□□ 0.79
VPS29-206ENST00000549578 A0A1W2PR48 441 aa19.97■□□□□ 0.79
VPS29-206ENST00000549578 CYR61O00622 381 aa19.97■□□□□ 0.79
VPS29-206ENST00000549578 KLK10O43240 276 aa19.97■□□□□ 0.79
VPS29-206ENST00000549578 VPS4BO75351 444 aa19.97■□□□□ 0.79
VPS29-206ENST00000549578 PTPN4P29074 926 aa19.97■□□□□ 0.79
VPS29-206ENST00000549578 SEC24CP53992 1094 aa19.97■□□□□ 0.79
VPS29-206ENST00000549578 KLC1Q07866 573 aa19.97■□□□□ 0.79
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms