RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 CBX3Q13185 183 aa15.03■□□□□ -0
CUX1-211ENST00000546411 ZNF542PQ5EBM4 170 aa15.03■□□□□ -0
CUX1-211ENST00000546411 HSDL2Q6YN16 418 aa15.03■□□□□ -0
CUX1-211ENST00000546411 FCGR1BQ92637 280 aa15.03■□□□□ -0
CUX1-211ENST00000546411 TRMT2BQ96GJ1 504 aaKnown RBP15.03■□□□□ -0
CUX1-211ENST00000546411 DPH7Q9BTV6 452 aa15.03■□□□□ -0
CUX1-211ENST00000546411 PDFQ9HBH1 243 aa15.03■□□□□ -0
CUX1-211ENST00000546411 LOC105378220A0A1B0GUY1 285 aaPredicted RBP15.02■□□□□ -0
CUX1-211ENST00000546411 ACOX3O15254 700 aa15.02■□□□□ -0
CUX1-211ENST00000546411 HCN1O60741 890 aa15.02■□□□□ -0
CUX1-211ENST00000546411 KAT7O95251 611 aa15.02■□□□□ -0
CUX1-211ENST00000546411 ADRB3P13945 408 aa15.02■□□□□ -0
CUX1-211ENST00000546411 CEBPBP17676 345 aa15.02■□□□□ -0
CUX1-211ENST00000546411 MATN1P21941 496 aa15.02■□□□□ -0
CUX1-211ENST00000546411 BMPR1AP36894 532 aa15.02■□□□□ -0
CUX1-211ENST00000546411 RAB25P57735 213 aa15.02■□□□□ -0
CUX1-211ENST00000546411 SKP1P63208 163 aa15.02■□□□□ -0
CUX1-211ENST00000546411 GSTM4Q03013 218 aa15.02■□□□□ -0
CUX1-211ENST00000546411 CDK5R2Q13319 367 aa15.02■□□□□ -0
CUX1-211ENST00000546411 CLCA4Q14CN2 919 aa15.02■□□□□ -0
CUX1-211ENST00000546411 RGNQ15493 299 aa15.02■□□□□ -0
CUX1-211ENST00000546411 ZNF404Q494X3 552 aa15.02■□□□□ -0
CUX1-211ENST00000546411 TCEAL5Q5H9L2 206 aa15.02■□□□□ -0
CUX1-211ENST00000546411 ANKRD34AQ69YU3 496 aa15.02■□□□□ -0
CUX1-211ENST00000546411 CD300LGQ6UXG3 332 aa15.02■□□□□ -0
CUX1-211ENST00000546411 NEK10Q6ZWH5 1172 aa15.02■□□□□ -0
CUX1-211ENST00000546411 SNX29P2Q8IUI4 249 aa15.02■□□□□ -0
CUX1-211ENST00000546411 SLC15A4Q8N697 577 aa15.02■□□□□ -0
CUX1-211ENST00000546411 MFSD2AQ8NA29 543 aa15.02■□□□□ -0
CUX1-211ENST00000546411 KLHL6Q8WZ60 621 aa15.02■□□□□ -0
CUX1-211ENST00000546411 TTTY10Q9BZA0 68 aa15.02■□□□□ -0
CUX1-211ENST00000546411 VILLO15195 856 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 MPZL2O60487 215 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 STX11O75558 287 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 C7P10643 843 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 HOXB2P14652 356 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 TMBIM6P55061 237 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 QPRTQ15274 297 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 FAM217AQ8IXS0 508 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 CLMPQ9H6B4 373 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 NEUROD4Q9HD90 331 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 FBXL21Q9UKT6 434 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 RPL36Q9Y3U8 105 aaKnown RBP15.02□□□□□ -0.01
CUX1-211ENST00000546411 TMEM202A6NGA9 273 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 FAM170BA6NMN3 283 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 IDH3BO43837 385 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 NUAK1O60285 661 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 OR6A2O95222 327 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 ASGR2P07307 311 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 RETP07949 1114 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 POLR2CP19387 275 aaPredicted RBP15.02□□□□□ -0.01
CUX1-211ENST00000546411 CR2P20023 1033 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 GTF2E2P29084 291 aaKnown RBP15.02□□□□□ -0.01
CUX1-211ENST00000546411 DEFB134Q4QY38 66 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 USP43Q70EL4 1123 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 ZNF548Q8NEK5 533 aaPredicted RBP15.02□□□□□ -0.01
CUX1-211ENST00000546411 FAM46DQ8NEK8 389 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 C16orf78Q8WTQ4 265 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 SLCO4A1Q96BD0 722 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 OTUB2Q96DC9 234 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 IFT27Q9BW83 186 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 RC3H2Q9HBD1 1191 aaKnown RBP15.02□□□□□ -0.01
CUX1-211ENST00000546411 TMEM27Q9HBJ8 222 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 PEX16Q9Y5Y5 336 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 QSER1Q2KHR3 1735 aa15.02□□□□□ -0.01
CUX1-211ENST00000546411 FXYD1O00168 92 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 IL12RB1P42701 662 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 SLC6A11P48066 632 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 ZNF675Q8TD23 568 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 PDLIM5Q96HC4 596 aaKnown RBP15.01□□□□□ -0.01
CUX1-211ENST00000546411 PKMYT1Q99640 499 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 WNK3Q9BYP7 1800 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 A0A1W2PQU0 124 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 ALOX5P09917 674 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 TCEA1P23193 301 aaKnown RBP15.01□□□□□ -0.01
CUX1-211ENST00000546411 HRH2P25021 359 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 PSMB5P28074 263 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 ATP12AP54707 1039 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 KCNC4Q03721 635 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 TUBA3CQ13748 450 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 MRPL58Q14197 206 aaKnown RBP15.01□□□□□ -0.01
CUX1-211ENST00000546411 SPARTQ8N0X7 666 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 PAK1IP1Q9NWT1 392 aaPredicted RBP15.01□□□□□ -0.01
CUX1-211ENST00000546411 CLDND1Q9NY35 253 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 CHURC1-FNTBB4DL54 471 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 BMXP51813 675 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 MVKQ03426 396 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 GINS1Q14691 196 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 TMEM151AQ8N4L1 468 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 CWH43Q9H720 699 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 INTS6Q9UL03 887 aaKnown RBP15.01□□□□□ -0.01
CUX1-211ENST00000546411 SIPA1L1O43166 1804 aa15.01□□□□□ -0.01
CUX1-211ENST00000546411 ZNFX1Q9P2E3 1918 aaKnown RBP15.01□□□□□ -0.01
CUX1-211ENST00000546411 ANHXE9PGG2 379 aa15□□□□□ -0.01
CUX1-211ENST00000546411 HPRP00739 348 aa15□□□□□ -0.01
CUX1-211ENST00000546411 SLAMF1Q13291 335 aa15□□□□□ -0.01
CUX1-211ENST00000546411 MPP7Q5T2T1 576 aa15□□□□□ -0.01
CUX1-211ENST00000546411 PHF6Q8IWS0 365 aaKnown RBP eCLIP15□□□□□ -0.011e-9■□□□□ 9.1
CUX1-211ENST00000546411 TMEM19Q96HH6 336 aa15□□□□□ -0.01
CUX1-211ENST00000546411 RIPOR3Q96MK2 946 aa15□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms