RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 FFAR1O14842 300 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 SEMA7AO75326 666 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 TNFRSF21O75509 655 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 CSF2RAP15509 400 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 POLR2EP19388 210 aaKnown RBP14.37□□□□□ -0.11
USP28-214ENST00000545540 S100A5P33763 92 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 HOXD12P35452 270 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 SEC23BQ15437 767 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 ATAD3BQ5T9A4 648 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 UBE2UQ5VVX9 321 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 RAET1GQ6H3X3 334 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 SLC46A3Q7Z3Q1 461 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 GATAD2AQ86YP4 633 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 KREMEN2Q8NCW0 462 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 ATL1Q8WXF7 558 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 IRF7Q92985 503 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 MYDGFQ969H8 173 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 FOPNLQ96NB1 174 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 SIGLEC11Q96RL6 698 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 MGLLQ99685 303 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 PITX2Q99697 317 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 ASAH2Q9NR71 780 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 C1GALT1Q9NS00 363 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 HTR3EA5X5Y0 456 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 PITPNM1O00562 1244 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 ADAMDEC1O15204 470 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 RPLP0P05388 317 aaKnown RBP14.37□□□□□ -0.11
USP28-214ENST00000545540 SYN1P17600 705 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 HOXD10P28358 340 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 NEK10Q6ZWH5 1172 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 AMER3Q8N944 861 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 OR5D16Q8NGK9 328 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 OR5AR1Q8NGP9 310 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 NUAK2Q9H093 628 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 RNF208Q9H0X6 261 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 KCNK12Q9HB15 430 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 ERVW-1Q9UQF0 538 aa14.37□□□□□ -0.11
USP28-214ENST00000545540 GPC6Q9Y625 555 aaPredicted RBP14.37□□□□□ -0.11
USP28-214ENST00000545540 ZNF197O14709 1029 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 C1orf105O95561 183 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 FHP07954 510 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 FURINP09958 794 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 PCGF2P35227 344 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 PLPP4Q5VZY2 271 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 CCBE1Q6UXH8 406 aaPredicted RBP14.36□□□□□ -0.11
USP28-214ENST00000545540 LIPIQ6XZB0 460 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 IPCEF1Q8WWN9 437 aaPredicted RBP14.36□□□□□ -0.11
USP28-214ENST00000545540 TRMT61AQ96FX7 289 aaKnown RBP14.36□□□□□ -0.11
USP28-214ENST00000545540 NEDD4LQ96PU5 975 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 SNTG1Q9NSN8 517 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 EHD3Q9NZN3 535 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 ASF1AQ9Y294 204 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 PADI2Q9Y2J8 665 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 ARHGAP33O14559 1287 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 OR10H3O60404 316 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 FGF18O76093 207 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 PIN1Q13526 163 aaPredicted RBP14.36□□□□□ -0.11
USP28-214ENST00000545540 AGAP7PQ5VUJ5 663 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 TMIGD1Q6UXZ0 262 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 PARS2Q7L3T8 475 aaKnown RBP14.36□□□□□ -0.11
USP28-214ENST00000545540 LACC1Q8IV20 430 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 HORMAD2Q8N7B1 307 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 DMRTB1Q96MA1 342 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 EMILIN2Q9BXX0 1053 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 BOLA1Q9Y3E2 137 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 COL4A6Q14031 1691 aa14.36□□□□□ -0.11
USP28-214ENST00000545540 CLDN24A6NM45 220 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 GPX5O75715 221 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 ANXA8L1Q5VT79 327 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 METTL2BQ6P1Q9 378 aaKnown RBP14.35□□□□□ -0.11
USP28-214ENST00000545540 FAM83HQ6ZRV2 1179 aaPredicted RBP14.35□□□□□ -0.11
USP28-214ENST00000545540 GDPD3Q7L5L3 318 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 SHFQ7M4L6 423 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 GALNT13Q8IUC8 556 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 COQ8BQ96D53 544 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 CAPNS2Q96L46 248 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 GABARAPL3Q9BY60 117 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 QRSL1Q9H0R6 528 aaKnown RBP14.35□□□□□ -0.11
USP28-214ENST00000545540 CUEDC1Q9NWM3 386 aaPredicted RBP14.35□□□□□ -0.11
USP28-214ENST00000545540 ZNF282Q9UDV7 671 aaPredicted RBP14.35□□□□□ -0.11
USP28-214ENST00000545540 HSPE1-MOB4S4R3N1 261 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 RECKO95980 971 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 ASMTP46597 345 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 SLC7A9P82251 487 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 TAP2Q03519 686 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 RNF165Q6ZSG1 346 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 C12orf40Q86WS4 652 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 CHCHD4Q8N4Q1 142 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 AMER2Q8N7J2 671 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 CPEB1Q9BZB8 566 aaKnown RBP14.35□□□□□ -0.11
USP28-214ENST00000545540 DMRT3Q9NQL9 472 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 TAAR2Q9P1P5 351 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 BTNL2Q9UIR0 455 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 CARD8Q9Y2G2 431 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 YARS2Q9Y2Z4 477 aaKnown RBP14.35□□□□□ -0.11
USP28-214ENST00000545540 NOTCH4Q99466 2003 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 SLC5A10A0PJK1 596 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 DNAJB5O75953 348 aa14.35□□□□□ -0.11
USP28-214ENST00000545540 TCEA1P23193 301 aaKnown RBP14.35□□□□□ -0.11
USP28-214ENST00000545540 SSTR4P31391 388 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms