RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 KCNQ1P51787 676 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 NTRK2Q16620 822 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 USP51Q70EK9 711 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 OR10H4Q8NGA5 316 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 MCMBPQ9BTE3 642 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 GALNT9Q9HCQ5 603 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 MRPL15Q9P015 296 aaKnown RBP13.69□□□□□ -0.22
LIMS1-215ENST00000544547 FCF1Q9Y324 198 aaKnown RBP13.69□□□□□ -0.22
LIMS1-215ENST00000544547 PCDHGB2Q9Y5G2 931 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 ARFGEF1Q9Y6D6 1849 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 POM121CA8CG34 1229 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 WASHC1A8K0Z3 465 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 DPY19L1Q2PZI1 675 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 HSD17B12Q53GQ0 312 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 GPR149Q86SP6 731 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 CHPFQ8IZ52 775 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 GEMIN6Q8WXD5 167 aaKnown RBP13.69□□□□□ -0.22
LIMS1-215ENST00000544547 OR51V1Q9H2C8 321 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 COMMD9Q9P000 198 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 ZNF69Q9UC07 566 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 CD84Q9UIB8 345 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP13.69□□□□□ -0.22
LIMS1-215ENST00000544547 CD8B2A6NJW9 211 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 SLC16A6O15403 523 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 CHST10O43529 356 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 MTX2O75431 263 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 INHBBP09529 407 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 CD8BP10966 210 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 PTPN2P17706 415 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 PIK3CBP42338 1070 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 CRISP1P54107 249 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 PCDH1Q08174 1060 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 ZMAT1Q5H9K5 638 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 LRRC73Q5JTD7 316 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 NOXRED1Q6NXP6 359 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 GALNT13Q8IUC8 556 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 SLC38A6Q8IZM9 456 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 NPLOC4Q8TAT6 608 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 RFT1Q96AA3 541 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 COQ10AQ96MF6 247 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 SRRDQ9UH36 339 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 TBC1D24Q9ULP9 559 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 ASF1AQ9Y294 204 aa13.69□□□□□ -0.22
LIMS1-215ENST00000544547 TARM1B6A8C7 271 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 C1QTNF3-AMACRE9PGA6 284 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 FABP7O15540 132 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 RPS17P08708 135 aaKnown RBP13.68□□□□□ -0.22
LIMS1-215ENST00000544547 MSL3P1P0C860 447 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 BMP7P18075 431 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 ZNF33AQ06730 810 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 GNA13Q14344 377 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 ENTHD1Q8IYW4 607 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 EXOSC8Q96B26 276 aaKnown RBP13.68□□□□□ -0.22
LIMS1-215ENST00000544547 CD244Q9BZW8 370 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 SLC32A1Q9H598 525 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 EQTNQ9NQ60 294 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 QPCTLQ9NXS2 382 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 ZFP37Q9Y6Q3 630 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-215ENST00000544547 CDK5RAP2Q96SN8 1893 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 A0A0D9SEW6 157 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 ARNTLO00327 626 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 SOCS7O14512 581 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 GJB3O75712 270 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 HLA-DPB1P04440 258 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 IGFBP6P24592 240 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-215ENST00000544547 GGT2P36268 569 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 SF1Q15637 639 aaKnown RBP13.68□□□□□ -0.22
LIMS1-215ENST00000544547 KIAA1324Q6UXG2 1013 aaKnown RBP13.68□□□□□ -0.22
LIMS1-215ENST00000544547 POMGNT2Q8NAT1 580 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 BRD7Q9NPI1 651 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 ZNF282Q9UDV7 671 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-215ENST00000544547 PGAP2Q9UHJ9 254 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 ACTL7AQ9Y615 435 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 ADAMTSL1Q8N6G6 1762 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 CARNS1A5YM72 827 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 EBLN1P0CF75 366 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 TGM4P49221 684 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 GDI2P50395 445 aaKnown RBP13.68□□□□□ -0.22
LIMS1-215ENST00000544547 PPP3R1P63098 170 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 SCRN3Q0VDG4 424 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 FAM122CQ6P4D5 195 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 CFAP77Q6ZQR2 320 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 DNAJC22Q8N4W6 341 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 IQCF1Q8N6M8 205 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 OR6F1Q8NGZ6 308 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 MYO19Q96H55 970 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 DEFB118Q96PH6 123 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 GAL3ST1Q99999 423 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 CDADC1Q9BWV3 514 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 DUSP21Q9H596 190 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 ACSL6Q9UKU0 697 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 USP3Q9Y6I4 520 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 C2orf92A0A1B0GVN3 265 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 A0A1W2PPK0 400 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 QSOX1O00391 747 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 GFRA2O00451 464 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 PTGESO14684 152 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 POLR1CO15160 346 aaPredicted RBP13.68□□□□□ -0.22
LIMS1-215ENST00000544547 CLDN11O75508 207 aa13.68□□□□□ -0.22
LIMS1-215ENST00000544547 TLX1P31314 330 aaPredicted RBP13.68□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms