RNA–Protein interactions for RNA: ENST00000533115.5

SSSCA1-207, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

TSL 3

Gene SSSCA1, Length 1,077 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-207ENST00000533115 IPPKQ9H8X2 491 aa28.35■■■□□ 2.13
SSSCA1-207ENST00000533115 LYRM4Q9HD34 91 aa28.35■■■□□ 2.13
SSSCA1-207ENST00000533115 XPR1Q9UBH6 696 aa28.35■■■□□ 2.13
SSSCA1-207ENST00000533115 TMCO1Q9UM00 188 aa28.35■■■□□ 2.13
SSSCA1-207ENST00000533115 TSC22D4Q9Y3Q8 395 aa28.35■■■□□ 2.13
SSSCA1-207ENST00000533115 CLDN16Q9Y5I7 305 aa28.35■■■□□ 2.13
SSSCA1-207ENST00000533115 UGDHO60701 494 aa28.34■■■□□ 2.13
SSSCA1-207ENST00000533115 SEMA7AO75326 666 aa28.34■■■□□ 2.13
SSSCA1-207ENST00000533115 SNRPAP09012 282 aaKnown RBP28.34■■■□□ 2.13
SSSCA1-207ENST00000533115 ATP5A1P25705 553 aaKnown RBP28.34■■■□□ 2.13
SSSCA1-207ENST00000533115 PIK3CBP42338 1070 aa28.34■■■□□ 2.13
SSSCA1-207ENST00000533115 TUBA3CQ13748 450 aa28.34■■■□□ 2.13
SSSCA1-207ENST00000533115 DDX39BQ13838 428 aaKnown RBP28.34■■■□□ 2.13
SSSCA1-207ENST00000533115 LGSNQ5TDP6 509 aa28.34■■■□□ 2.13
SSSCA1-207ENST00000533115 KHDRBS2Q5VWX1 349 aaKnown RBP28.34■■■□□ 2.13
SSSCA1-207ENST00000533115 TUBA3EQ6PEY2 450 aa28.34■■■□□ 2.13
SSSCA1-207ENST00000533115 ACOT4Q8N9L9 421 aa28.34■■■□□ 2.13
SSSCA1-207ENST00000533115 HUS1BQ8NHY5 278 aa28.34■■■□□ 2.13
SSSCA1-207ENST00000533115 TAAR6Q96RI8 345 aa28.34■■■□□ 2.13
SSSCA1-207ENST00000533115 CDCP1Q9H5V8 836 aa28.34■■■□□ 2.13
SSSCA1-207ENST00000533115 KCMF1Q9P0J7 381 aa28.34■■■□□ 2.13
SSSCA1-207ENST00000533115 PCDHGA11Q9Y5H2 935 aa28.34■■■□□ 2.13
SSSCA1-207ENST00000533115 TGFBR3LH3BV60 316 aa28.33■■■□□ 2.13
SSSCA1-207ENST00000533115 RTCAO00442 366 aaKnown RBP28.33■■■□□ 2.13
SSSCA1-207ENST00000533115 RIPK2O43353 540 aa28.33■■■□□ 2.13
SSSCA1-207ENST00000533115 EDN3P14138 238 aa28.33■■■□□ 2.13
SSSCA1-207ENST00000533115 EEF1DP29692 281 aaKnown RBP28.33■■■□□ 2.13
SSSCA1-207ENST00000533115 TERF2Q15554 542 aa28.33■■■□□ 2.13
SSSCA1-207ENST00000533115 AP5B1Q2VPB7 878 aa28.33■■■□□ 2.13
SSSCA1-207ENST00000533115 DEPDC1Q5TB30 811 aa28.33■■■□□ 2.13
SSSCA1-207ENST00000533115 RPS19BP1Q86WX3 136 aaKnown RBP28.33■■■□□ 2.13
SSSCA1-207ENST00000533115 RNF175Q8N4F7 328 aa28.33■■■□□ 2.13
SSSCA1-207ENST00000533115 PHF21BQ96EK2 531 aa28.33■■■□□ 2.13
SSSCA1-207ENST00000533115 UTP23Q9BRU9 249 aaKnown RBP28.33■■■□□ 2.13
SSSCA1-207ENST00000533115 OR51B5Q9H339 312 aa28.33■■■□□ 2.13
SSSCA1-207ENST00000533115 PNO1Q9NRX1 252 aaKnown RBP28.33■■■□□ 2.13
SSSCA1-207ENST00000533115 OLAHQ9NV23 265 aa28.33■■■□□ 2.13
SSSCA1-207ENST00000533115 USP9YO00507 2555 aaPredicted RBP28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 H0YIV9 168 aa28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 SAP18O00422 153 aaKnown RBP28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 SMIM24O75264 130 aa28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 MYO1DO94832 1006 aa28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 SCELO95171 688 aa28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 FAM153BP0C7A2 387 aa28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 HIST1H1TP22492 207 aaPredicted RBP28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 GCAP28676 217 aa28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 SSR2P43308 183 aa28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 FAM153CQ494X1 144 aa28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 L3MBTL4Q8NA19 623 aa28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 REPS1Q96D71 796 aa28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 MTERF1Q99551 399 aaKnown RBP28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 MAPKAP1Q9BPZ7 522 aa28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 SLX1AQ9BQ83 275 aa28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 DMRT3Q9NQL9 472 aa28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 ANKRD10Q9NXR5 420 aa28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 HIVEP3Q5T1R4 2406 aa28.32■■■□□ 2.12
SSSCA1-207ENST00000533115 SYNDIG1LA6NDD5 238 aa28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 GABRR3A8MPY1 467 aa28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 STX16-NPEPL1H3BU86 382 aa28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 STX16O14662 325 aa28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 CTNSO60931 367 aa28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 RASAL1O95294 804 aa28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 CD96P40200 585 aa28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 ZNF766Q5HY98 468 aa28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 ZNF324BQ6AW86 544 aaPredicted RBP28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 ADGRD1Q6QNK2 874 aa28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 CLNKQ7Z7G1 428 aa28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 LRRN4CLQ8ND94 238 aa28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 B3GNT7Q8NFL0 401 aa28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 RGMAQ96B86 450 aa28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 SIGLEC12Q96PQ1 595 aa28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 MRPL57Q9BQC6 102 aaKnown RBP28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 NOL11Q9H8H0 719 aaKnown RBP28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 RNF11Q9Y3C5 154 aa28.31■■■□□ 2.12
SSSCA1-207ENST00000533115 BLACEA4D250 179 aa28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 PPP2R1BP30154 601 aa28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 ST13P50502 369 aaKnown RBP28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 PHEXP78562 749 aa28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 OR1C1Q15619 314 aa28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 CPSF6Q16630 551 aaKnown RBP eCLIP28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 OR4C11Q6IEV9 310 aa28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 TIFABQ6ZNK6 161 aa28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 APCDD1LQ8NCL9 501 aa28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 MDS2Q8NDY4 140 aa28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 MTBPQ96DY7 904 aa28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 PSMG3-AS1Q96PY0 264 aa28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 CENPKQ9BS16 269 aa28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 DEFB126Q9BYW3 111 aa28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 TXLNGYQ9BZA5 131 aa28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 MRPL46Q9H2W6 279 aaKnown RBP28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 PPIEQ9UNP9 301 aaKnown RBP28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 PCDHGB6Q9Y5F9 930 aa28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 SPACA6W5XKT8 324 aa28.3■■■□□ 2.12
SSSCA1-207ENST00000533115 CDK2AP1O14519 115 aa28.29■■■□□ 2.12
SSSCA1-207ENST00000533115 OR7A17O14581 309 aa28.29■■■□□ 2.12
SSSCA1-207ENST00000533115 CLDN9O95484 217 aa28.29■■■□□ 2.12
SSSCA1-207ENST00000533115 RAP1GDS1P52306 607 aa28.29■■■□□ 2.12
SSSCA1-207ENST00000533115 RPS13P62277 151 aaKnown RBP28.29■■■□□ 2.12
SSSCA1-207ENST00000533115 SSC4DQ8WTU2 575 aa28.29■■■□□ 2.12
SSSCA1-207ENST00000533115 ATP6V1E2Q96A05 226 aa28.29■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms