RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	GAP43	P17677	238 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	ADAR	P55265	1226 aa	Known RBP	3.78	□□□□□ -1.8
CD44-223	ENST00000526553	STXBP2	Q15833	593 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	HFE	Q30201	348 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	TOR1AIP1	Q5JTV8	583 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	FAM182A	Q5T1J6	154 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	FAM166A	Q6J272	317 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	ZNF774	Q6NX45	483 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	PODNL1	Q6PEZ8	512 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	MIER3	Q7Z3K6	550 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	PRSS42	Q7Z5A4	293 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	SLC47A2	Q86VL8	602 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	ABHD12	Q8N2K0	398 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	HDDC3	Q8N4P3	179 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	POM121L12	Q8N7R1	296 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	ST7L	Q8TDW4	575 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	AP2M1	Q96CW1	435 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	LURAP1	Q96LR2	239 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	RUFY1	Q96T51	708 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	OSBPL8	Q9BZF1	889 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	NAPB	Q9H115	298 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	NLGN3	Q9NZ94	848 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	SLC12A6	Q9UHW9	1150 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	HOOK1	Q9UJC3	728 aa	Known RBP	3.78	□□□□□ -1.8
CD44-223	ENST00000526553	ISY1	Q9ULR0	285 aa	Known RBP	3.78	□□□□□ -1.8
CD44-223	ENST00000526553	AGTPBP1	Q9UPW5	1226 aa		3.78	□□□□□ -1.8
CD44-223	ENST00000526553	RUVBL2	Q9Y230	463 aa	Known RBP	3.78	□□□□□ -1.8
CD44-223	ENST00000526553	NES	P48681	1621 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	RNF123	Q5XPI4	1314 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	TRBV2	A0A0J9YWF9	115 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	IQCM	A0A1B0GVH7	501 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	SYCE3	A1L190	88 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	CCDC69	A6NI79	296 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	SCO2	O43819	266 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	ECE2	O60344	883 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	BCAS2	O75934	225 aa	Predicted RBP	3.77	□□□□□ -1.81
CD44-223	ENST00000526553	C4BPB	P20851	252 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	MAPK3	P27361	379 aa	Predicted RBP	3.77	□□□□□ -1.81
CD44-223	ENST00000526553	OXTR	P30559	389 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	NOV	P48745	357 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	SERPINH1	P50454	418 aa	Known RBP	3.77	□□□□□ -1.81
CD44-223	ENST00000526553	NDST2	P52849	883 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	SLC12A3	P55017	1021 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	ERVK-16	P61578	105 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	IL1RL1	Q01638	556 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	SLC34A1	Q06495	639 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	WASHC5	Q12768	1159 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	CETN1	Q12798	172 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	COX10	Q12887	443 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	MAPK11	Q15759	364 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	IFI44L	Q53G44	452 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	FAM46C	Q5VWP2	391 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	KCTD11	Q693B1	232 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	CDHR3	Q6ZTQ4	885 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	APCDD1	Q8J025	514 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	TEX9	Q8N6V9	391 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	TSSK2	Q96PF2	358 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	NEDD4L	Q96PU5	975 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	TMEM237	Q96Q45	408 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	PANX3	Q96QZ0	392 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	NAP1L3	Q99457	506 aa	Predicted RBP	3.77	□□□□□ -1.81
CD44-223	ENST00000526553	IL12RB2	Q99665	862 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	ATF6B	Q99941	703 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	IDI2	Q9BXS1	227 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	TRIM7	Q9C029	511 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	ABCG8	Q9H221	673 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	C1orf21	Q9H246	121 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	C10orf88	Q9H8K7	445 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	GNB4	Q9HAV0	340 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	MAGEF1	Q9HAY2	307 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	DNAJC11	Q9NVH1	559 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	GMEB2	Q9UKD1	530 aa		3.77	□□□□□ -1.81
CD44-223	ENST00000526553	TDRKH	Q9Y2W6	561 aa	Known RBP	3.77	□□□□□ -1.81
CD44-223	ENST00000526553	MTF2	Q9Y483	593 aa	Predicted RBP	3.77	□□□□□ -1.81
CD44-223	ENST00000526553	SMARCA2	P51531	1590 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	PFAS	O15067	1338 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	TRAV18	A0A075B6X5	111 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	IGHV3-38	A0A0C4DH36	116 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	hCG_38984	A0A1B0GV85	526 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	ACOD1	A6NK06	481 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	VEGFD	O43915	354 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	PRPSAP2	O60256	369 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	MTRF1	O75570	445 aa	Known RBP	3.76	□□□□□ -1.81
CD44-223	ENST00000526553	B3GALNT1	O75752	331 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	POP4	O95707	220 aa	Known RBP	3.76	□□□□□ -1.81
CD44-223	ENST00000526553	AOC1	P19801	751 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	GPR183	P32249	361 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	SERPINB6	P35237	376 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	TSTA3	Q13630	321 aa	Predicted RBP	3.76	□□□□□ -1.81
CD44-223	ENST00000526553	MACC1	Q6ZN28	852 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	TOM1L2	Q6ZVM7	507 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	ZNF410	Q86VK4	478 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	AQP12A	Q8IXF9	295 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	SFRP1	Q8N474	314 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	MRPL43	Q8N983	215 aa	Known RBP	3.76	□□□□□ -1.81
CD44-223	ENST00000526553	KIAA0895	Q8NCT3	520 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	ANKRD20A12P	Q8NF67	263 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	NXPE2	Q96DL1	559 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	TBC1D31	Q96DN5	1066 aa		3.76	□□□□□ -1.81
CD44-223	ENST00000526553	RASL10B	Q96S79	203 aa		3.76	□□□□□ -1.81

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