RNA–Protein interactions for RNA: ENST00000513643.5

RNF4-221, Transcript of ring finger protein 4, humanhuman

TSL 3

Gene RNF4, Length 516 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4-221ENST00000513643 ZRSR2Q15696 482 aaKnown RBP9.1□□□□□ -0.95
RNF4-221ENST00000513643 INPP5JQ15735 1006 aaPredicted RBP9.1□□□□□ -0.95
RNF4-221ENST00000513643 IGFBP7Q16270 282 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 EXT1Q16394 746 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 ZNF678Q5SXM1 525 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 OR4C11Q6IEV9 310 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 RPUSD3Q6P087 351 aaKnown RBP9.1□□□□□ -0.95
RNF4-221ENST00000513643 PAPD4Q6PIY7 484 aaKnown RBP9.1□□□□□ -0.95
RNF4-221ENST00000513643 ZNF595Q8IYB9 648 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 LGI4Q8N135 537 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 ZADH2Q8N4Q0 377 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 MREGQ8N565 214 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 APCDD1LQ8NCL9 501 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 CAVIN3Q969G5 261 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 L3HYPDHQ96EM0 354 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 FAR2Q96K12 515 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 PTCHD1Q96NR3 888 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 CDK15Q96Q40 435 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 CSF3RQ99062 836 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 LPAR4Q99677 370 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 MAPKAP1Q9BPZ7 522 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 TMEM109Q9BVC6 243 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 ERVK-6Q9BXR3 956 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 RBCK1Q9BYM8 510 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 OR51B5Q9H339 312 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 TRIM45Q9H8W5 580 aaPredicted RBP9.1□□□□□ -0.95
RNF4-221ENST00000513643 ACTR8Q9H981 624 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 DCDC2Q9UHG0 476 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 RAB21Q9UL25 225 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 ASB4Q9Y574 426 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 SPTAN1Q13813 2472 aaKnown RBP9.1□□□□□ -0.95
RNF4-221ENST00000513643 HECTD1Q9ULT8 2610 aa9.1□□□□□ -0.95
RNF4-221ENST00000513643 A0A0A6YYD5 115 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 BLACEA4D250 179 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 SAGE2PA6NJ88 616 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 RTCAO00442 366 aaKnown RBP9.09□□□□□ -0.95
RNF4-221ENST00000513643 CDH16O75309 829 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 SEMA3DO95025 777 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 PROCP04070 461 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 TNFSF10P50591 281 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 NEK2P51955 445 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 CDH13P55290 713 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 OR4D2P58180 307 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 RPS13P62277 151 aaKnown RBP9.09□□□□□ -0.95
RNF4-221ENST00000513643 CLCQ05315 142 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 TGM3Q08188 693 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 TLR1Q15399 786 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 CPSF6Q16630 551 aaKnown RBP eCLIP9.09□□□□□ -0.95
RNF4-221ENST00000513643 FRG2Q64ET8 278 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 B3GNTL1Q67FW5 361 aaPredicted RBP9.09□□□□□ -0.95
RNF4-221ENST00000513643 LETMD1Q6P1Q0 360 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 EMBQ6PCB8 327 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 RPS27LQ71UM5 84 aaKnown RBP9.09□□□□□ -0.95
RNF4-221ENST00000513643 CATSPER1Q8NEC5 780 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 OR4F6Q8NGB9 312 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 EPS8L3Q8TE67 593 aaKnown RBP9.09□□□□□ -0.95
RNF4-221ENST00000513643 CCT6BQ92526 530 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 RGMAQ96B86 450 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 ANKRD9Q96BM1 317 aaPredicted RBP9.09□□□□□ -0.95
RNF4-221ENST00000513643 REPS1Q96D71 796 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 SNRNP40Q96DI7 357 aaKnown RBP9.09□□□□□ -0.95
RNF4-221ENST00000513643 SCYL1Q96KG9 808 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 MAGEB10Q96LZ2 347 aaPredicted RBP9.09□□□□□ -0.95
RNF4-221ENST00000513643 TMEM237Q96Q45 408 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 FRG2BQ96QU4 278 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 MTERF1Q99551 399 aaKnown RBP9.09□□□□□ -0.95
RNF4-221ENST00000513643 MFRPQ9BY79 579 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 TRIM4Q9C037 500 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 MKS1Q9NXB0 559 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 PTGFRNQ9P2B2 879 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 VTI1BQ9UEU0 232 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 TBK1Q9UHD2 729 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 LGALS13Q9UHV8 139 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 ZNF223Q9UK11 482 aaPredicted RBP9.09□□□□□ -0.95
RNF4-221ENST00000513643 PLAAQ9Y263 795 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 ANGPTL3Q9Y5C1 460 aa9.09□□□□□ -0.95
RNF4-221ENST00000513643 SERTM1A2A2V5 107 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 SYNDIG1LA6NDD5 238 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 TMEM200CA6NKL6 621 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 TTLL8A6PVC2 850 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 PYCARD-AS1I3L0S3 204 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 GOLGA8RI6L899 631 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 PSMD12O00232 456 aaPredicted RBP9.08□□□□□ -0.96
RNF4-221ENST00000513643 SAP18O00422 153 aaKnown RBP9.08□□□□□ -0.96
RNF4-221ENST00000513643 CLDN4O14493 209 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 PROM1O43490 865 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 TMPRSS11DO60235 418 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 MAN1A2O60476 641 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 PLIN3O60664 434 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 EEDO75530 441 aaKnown RBP9.08□□□□□ -0.96
RNF4-221ENST00000513643 WDPCPO95876 746 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 OTCP00480 354 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 PCNAP12004 261 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 CCNG1P51959 295 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 DNAJB13P59910 316 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 SRSF1Q07955 248 aaKnown RBP eCLIP9.08□□□□□ -0.964e-6■□□□□ 8.1
RNF4-221ENST00000513643 TBL3Q12788 808 aaKnown RBP9.08□□□□□ -0.96
RNF4-221ENST00000513643 AP5B1Q2VPB7 878 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 BTBD16Q32M84 506 aa9.08□□□□□ -0.96
RNF4-221ENST00000513643 PRR30Q53SZ7 412 aaPredicted RBP9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 56.5 ms