RNA–Protein interactions for RNA: ENST00000508604.5

NUP54-208, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 1,671 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-208ENST00000508604 FAM25EA8MYX2 175 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 C17orf105B2RV13 164 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 TRIM49D1C9J1S8 452 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 ADAM20O43506 726 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 KINO60870 393 aaKnown RBP1.74□□□□□ -2.13
NUP54-208ENST00000508604 E2F6O75461 281 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 IGHDP01880 384 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 GOT1P17174 413 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 CTNNA2P26232 953 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 PCGF2P35227 344 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 RAD52P43351 418 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 SLC1A6P48664 564 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 SLC25A1P53007 311 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 PEX3P56589 373 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 RWDD2BP57060 319 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 IFI35P80217 286 aaPredicted RBP1.74□□□□□ -2.13
NUP54-208ENST00000508604 RALGDSQ12967 914 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 BECN1Q14457 450 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 PDIA5Q14554 519 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 KCTD2Q14681 263 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 PCLAFQ15004 111 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 ABRAXAS2Q15018 415 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 CCDC184Q52MB2 194 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 TTC27Q6P3X3 843 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 PRSS35Q8N3Z0 413 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 PDCL2Q8N4E4 241 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 SETD7Q8WTS6 366 aaKnown RBP1.74□□□□□ -2.13
NUP54-208ENST00000508604 PCNPQ8WW12 178 aaKnown RBP1.74□□□□□ -2.13
NUP54-208ENST00000508604 STARD4Q96DR4 205 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 SGF29Q96ES7 293 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 ANKZF1Q9H8Y5 726 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 PDE7BQ9NP56 450 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 COMMD8Q9NX08 183 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 QPCTLQ9NXS2 382 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 NSMCE4AQ9NXX6 385 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 HOXC10Q9NYD6 342 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 PPIEQ9UNP9 301 aaKnown RBP1.74□□□□□ -2.13
NUP54-208ENST00000508604 ZFP37Q9Y6Q3 630 aaPredicted RBP1.74□□□□□ -2.13
NUP54-208ENST00000508604 EIF4G1Q04637 1599 aaKnown RBP1.74□□□□□ -2.13
NUP54-208ENST00000508604 LOC390937A0A1W2PQ73 354 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 ERICH4A6NGS2 130 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 A8MU76 341 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 TRIM77I1YAP6 450 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 TSPAN9O75954 239 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 BEST1O76090 585 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 P0C879 139 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 AKR1B1P15121 316 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 HSD17B3P37058 310 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 SH3BGRP55822 239 aaPredicted RBP1.74□□□□□ -2.13
NUP54-208ENST00000508604 BTG1P62324 171 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 POLR2LP62875 67 aaKnown RBP1.74□□□□□ -2.13
NUP54-208ENST00000508604 NUCB2P80303 420 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 WASHC5Q12768 1159 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 EPS8Q12929 822 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 BAATQ14032 418 aaPredicted RBP1.74□□□□□ -2.13
NUP54-208ENST00000508604 WTAPQ15007 396 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 PARP10Q53GL7 1025 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 TFDP3Q5H9I0 405 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 AGAP6Q5VW22 663 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 AP1ARQ63HQ0 302 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 FUT10Q6P4F1 479 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 CHCHD4Q8N4Q1 142 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 TEX26Q8N6G2 289 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 OR6F1Q8NGZ6 308 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 SIPA1Q96FS4 1042 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 RCHY1Q96PM5 261 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 PCDHB18PQ96TA0 734 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 SH3GL3Q99963 347 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 TRIM7Q9C029 511 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 CCDC68Q9H2F9 335 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 PLEKHA3Q9HB20 300 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 SENP1Q9P0U3 644 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 BLOC1S6Q9UL45 172 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 RABL2BQ9UNT1 228 aa1.74□□□□□ -2.13
NUP54-208ENST00000508604 NIP7Q9Y221 180 aaKnown RBP eCLIP1.74□□□□□ -2.13
NUP54-208ENST00000508604 HBS1LQ9Y450 684 aaKnown RBP1.74□□□□□ -2.13
NUP54-208ENST00000508604 NISCHQ9Y2I1 1504 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 UQCRHLA0A096LP55 91 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 TRBV5-4A0A0C4DH59 114 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 F8VZ95 297 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 E2F3O00716 465 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 CLDN4O14493 209 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 PTGESO14684 152 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 DFNA5O60443 496 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 TSC22D2O75157 780 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 ERLIN1O75477 346 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 BBOX1O75936 387 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 KIAA0754O94854 1291 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 IGLV1-47P01700 117 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 UQCRHP07919 91 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 NR2F1P10589 423 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 IL11P20809 199 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 HOXD10P28358 340 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 PRPHP41219 470 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 ALDH3B1P43353 468 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 ZNF131P52739 623 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 STK4Q13043 487 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 PRPF4BQ13523 1007 aaKnown RBP1.73□□□□□ -2.13
NUP54-208ENST00000508604 GRB14Q14449 540 aa1.73□□□□□ -2.13
NUP54-208ENST00000508604 PTPRCAPQ14761 206 aa1.73□□□□□ -2.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms