RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, human

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP4-213	ENST00000488520	ITGA3	P26006	1051 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	EEF1D	P29692	281 aa	Known RBP	8.28	□□□□□ -1.08
USP4-213	ENST00000488520	HPD	P32754	393 aa	Predicted RBP	8.28	□□□□□ -1.08
USP4-213	ENST00000488520	CCNG1	P51959	295 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	PER3	P56645	1201 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	RIPPLY3	P57055	190 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	IRF8	Q02556	426 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	CDC16	Q13042	620 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	RBBP5	Q15291	538 aa	Known RBP	8.28	□□□□□ -1.08
USP4-213	ENST00000488520	PCBP2	Q15366	365 aa	Known RBP eCLIP	8.28	□□□□□ -1.08
USP4-213	ENST00000488520	ZRSR2	Q15696	482 aa	Known RBP	8.28	□□□□□ -1.08
USP4-213	ENST00000488520	XKR6	Q5GH73	641 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	PAGE2B	Q5JRK9	111 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	TTC19	Q6DKK2	380 aa	Predicted RBP	8.28	□□□□□ -1.08
USP4-213	ENST00000488520	IGFL3	Q6UXB1	125 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	ZYG11A	Q6WRX3	759 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	CDHR3	Q6ZTQ4	885 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	SH2D5	Q6ZV89	423 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	MILR1	Q7Z6M3	343 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	TRIM73	Q86UV7	250 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	MYLK4	Q86YV6	388 aa	Predicted RBP	8.28	□□□□□ -1.08
USP4-213	ENST00000488520	TRIM42	Q8IWZ5	723 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	ANKRD42	Q8N9B4	389 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	C19orf47	Q8N9M1	422 aa	Known RBP	8.28	□□□□□ -1.08
USP4-213	ENST00000488520	OR2L3	Q8NG85	312 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	OR2A1	Q8NGT9	310 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	DYDC1	Q8WWB3	177 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	SLC5A11	Q8WWX8	675 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	TM9SF4	Q92544	642 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	UBE2E3	Q969T4	207 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	ESAM	Q96AP7	390 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	CNDP1	Q96KN2	507 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	MAGEB10	Q96LZ2	347 aa	Predicted RBP	8.28	□□□□□ -1.08
USP4-213	ENST00000488520	PRAP1	Q96NZ9	151 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	IP6K3	Q96PC2	410 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	BARD1	Q99728	777 aa	Known RBP	8.28	□□□□□ -1.08
USP4-213	ENST00000488520	DPH2	Q9BQC3	489 aa	Predicted RBP	8.28	□□□□□ -1.08
USP4-213	ENST00000488520	AIF1L	Q9BQI0	150 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	DPH7	Q9BTV6	452 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	SGPP1	Q9BX95	441 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	SPRTN	Q9H040	489 aa	Predicted RBP	8.28	□□□□□ -1.08
USP4-213	ENST00000488520	IPPK	Q9H8X2	491 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	EML4	Q9HC35	981 aa	Known RBP	8.28	□□□□□ -1.08
USP4-213	ENST00000488520	FAM60A	Q9NP50	221 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	MKS1	Q9NXB0	559 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	IFT80	Q9P2H3	777 aa	Predicted RBP	8.28	□□□□□ -1.08
USP4-213	ENST00000488520	STOML1	Q9UBI4	398 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	DHCR7	Q9UBM7	475 aa	Known RBP	8.28	□□□□□ -1.08
USP4-213	ENST00000488520	ENTPD4	Q9Y227	616 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	STK38L	Q9Y2H1	464 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	CCDC168	Q8NDH2	2452 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	AKAP9	Q99996	3911 aa		8.28	□□□□□ -1.08
USP4-213	ENST00000488520	HCFC1	P51610	2035 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	WDR91	A4D1P6	747 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	ANKDD1B	A6NHY2	528 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520		A8MT66	165 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	AGPS	O00116	658 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	E2F3	O00716	465 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	TXNDC9	O14530	226 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	GSC2	O15499	205 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	PRPF4	O43172	522 aa	Known RBP eCLIP	8.27	□□□□□ -1.09
USP4-213	ENST00000488520	OR1F1	O43749	312 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	PRICKLE3	O43900	615 aa	Predicted RBP	8.27	□□□□□ -1.09
USP4-213	ENST00000488520	KLK8	O60259	260 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	DLX3	O60479	287 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	SRPX2	O60687	465 aa	Predicted RBP	8.27	□□□□□ -1.09
USP4-213	ENST00000488520	OR2B3	O76000	313 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	CLDN9	O95484	217 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	MLYCD	O95822	493 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	EIF2S1	P05198	315 aa	Known RBP	8.27	□□□□□ -1.09
USP4-213	ENST00000488520	SERPIND1	P05546	499 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	HBQ1	P09105	142 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	CDH1	P12830	882 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	MAG	P20916	626 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	PSMB5	P28074	263 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	GRIA3	P42263	894 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	SLC6A12	P48065	614 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	DNAJB13	P59910	316 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	HERVK_113	P63132	956 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	PHEX	P78562	749 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	GTF2H2	Q13888	395 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	C18orf21	Q32NC0	220 aa	Predicted RBP	8.27	□□□□□ -1.09
USP4-213	ENST00000488520	FBXO48	Q5FWF7	155 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	TCTE1	Q5JU00	501 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	LIPM	Q5VYY2	423 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	GTF2H2C	Q6P1K8	395 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	NXPE4	Q6UWF7	544 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	PPP1R32	Q7Z5V6	425 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	MCAT	Q8IVS2	390 aa	Known RBP	8.27	□□□□□ -1.09
USP4-213	ENST00000488520	FAM20C	Q8IXL6	584 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	LRRC56	Q8IYG6	542 aa	Predicted RBP	8.27	□□□□□ -1.09
USP4-213	ENST00000488520	ARFGAP2	Q8N6H7	521 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	OR2Y1	Q8NGV0	311 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	DNAJB14	Q8TBM8	379 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	CCT6B	Q92526	530 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	ARL8A	Q96BM9	186 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	REPS1	Q96D71	796 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	GBP5	Q96PP8	586 aa		8.27	□□□□□ -1.09
USP4-213	ENST00000488520	WDR77	Q9BQA1	342 aa	Predicted RBP	8.27	□□□□□ -1.09
USP4-213	ENST00000488520	PLCD4	Q9BRC7	762 aa		8.27	□□□□□ -1.09

Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms