RNA–Protein interactions for RNA: ENST00000469897.1

CPSF4-210, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 689 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-210ENST00000469897 GMPRP36959 345 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 SSR4P51571 173 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 MTTPP55157 894 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 ATP6V0D1P61421 351 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 TERF2Q15554 542 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 ADPRMQ3LIE5 342 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 CMPK2Q5EBM0 449 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 SULT1C3Q6IMI6 304 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 TRIM40Q6P9F5 258 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 IL20RBQ6UXL0 311 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 UBE3DQ7Z6J8 389 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 TCAIMQ8N3R3 496 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 TMEM132CQ8N3T6 1108 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 BBOF1Q8ND07 529 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 OR52N2Q8NGI0 321 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 CDKL2Q92772 493 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 SDCCAG3Q96C92 435 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 TSPAN17Q96FV3 270 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 SEC16BQ96JE7 1060 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 LURAP1Q96LR2 239 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 SERINC2Q96SA4 455 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 DMRTA2Q96SC8 542 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 CSF3RQ99062 836 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 ERP44Q9BS26 406 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 TRIM8Q9BZR9 551 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 DEFB127Q9H1M4 99 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 EHD1Q9H4M9 534 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 TIMMDC1Q9NPL8 285 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 RNF14Q9UBS8 474 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 PTBP2Q9UKA9 531 aaKnown RBP12.36□□□□□ -0.43
CPSF4-210ENST00000469897 DAPP1Q9UN19 280 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 ERVK-11Q9UQG0 969 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 MRPS33Q9Y291 106 aaKnown RBP12.36□□□□□ -0.43
CPSF4-210ENST00000469897 CLCA3PQ9Y6N3 262 aa12.36□□□□□ -0.43
CPSF4-210ENST00000469897 WWP2O00308 870 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 EPORP19235 508 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 HPDP32754 393 aaPredicted RBP12.35□□□□□ -0.43
CPSF4-210ENST00000469897 GPX6P59796 221 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 STX4Q12846 297 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 CALCOCO2Q13137 446 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 CHIT1Q13231 466 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 HIST2H2ACQ16777 129 aaPredicted RBP12.35□□□□□ -0.43
CPSF4-210ENST00000469897 CDKL4Q5MAI5 379 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 HIST2H2AA3Q6FI13 130 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 CEP128Q6ZU80 1094 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 ZNF321PQ8N8H1 164 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 FAM57AQ8TBR7 257 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 CA5BP1Q8WTZ4 195 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 PHF10Q8WUB8 498 aaKnown RBP12.35□□□□□ -0.43
CPSF4-210ENST00000469897 PTPMT1Q8WUK0 201 aaPredicted RBP12.35□□□□□ -0.43
CPSF4-210ENST00000469897 PTCD3Q96EY7 689 aaKnown RBP12.35□□□□□ -0.43
CPSF4-210ENST00000469897 UBXN10Q96LJ8 280 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 RBBP8Q99708 897 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 CD244Q9BZW8 370 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 PITHD1Q9GZP4 211 aaPredicted RBP12.35□□□□□ -0.43
CPSF4-210ENST00000469897 COPS7BQ9H9Q2 264 aaPredicted RBP12.35□□□□□ -0.43
CPSF4-210ENST00000469897 PRM3Q9NNZ6 103 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 ADAP2Q9NPF8 381 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 DEPPQ9NTK1 212 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 MYOTQ9UBF9 498 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 VTI1BQ9UEU0 232 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 RNF112Q9ULX5 631 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 CACNA1DQ01668 2161 aa12.35□□□□□ -0.43
CPSF4-210ENST00000469897 CNTRLQ7Z7A1 2325 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 LRBAP50851 2863 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 TCRBV9S1A1TA0A576 114 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 PINLYPA6NC86 204 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 FAM159BA6NKW6 160 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 A8MVJ9 347 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 RTCAO00442 366 aaKnown RBP12.34□□□□□ -0.43
CPSF4-210ENST00000469897 FANCGO15287 622 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 LDB3O75112 727 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 FAM155BO75949 473 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 OR6B1O95007 311 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 TGFB1P01137 390 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 GP5P40197 560 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 MSH2P43246 934 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 ID2Q02363 134 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 IRF8Q02556 426 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 ILF2Q12905 390 aaKnown RBP12.34□□□□□ -0.43
CPSF4-210ENST00000469897 LAPTM5Q13571 262 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 EFTUD2Q15029 972 aaKnown RBP eCLIP12.34□□□□□ -0.437e-14■■■■■ 29.7
CPSF4-210ENST00000469897 ELAVL1Q15717 326 aaKnown RBP12.34□□□□□ -0.43
CPSF4-210ENST00000469897 PDK4Q16654 411 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 ZNF750Q32MQ0 723 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 HSDL2Q6YN16 418 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 CYS1Q717R9 158 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 CD163Q86VB7 1156 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 CTAGE3PQ8IX95 158 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 ZFP62Q8NB50 900 aaPredicted RBP12.34□□□□□ -0.43
CPSF4-210ENST00000469897 ASB15Q8WXK1 588 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 EXT2Q93063 718 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 KIAA1191Q96A73 305 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 WDR34Q96EX3 536 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 GPR22Q99680 433 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 CPNE1Q99829 537 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 MAPKAP1Q9BPZ7 522 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 EFCAB11Q9BUY7 163 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 HPF1Q9NWY4 346 aa12.34□□□□□ -0.43
CPSF4-210ENST00000469897 COQ3Q9NZJ6 369 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms