RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 CCDC77Q9BR77 488 aa21.24■□□□□ 0.99
PTPN4-207ENST00000460162 ROGDIQ9GZN7 287 aa21.24■□□□□ 0.99
PTPN4-207ENST00000460162 RAB17Q9H0T7 212 aa21.24■□□□□ 0.99
PTPN4-207ENST00000460162 CHST11Q9NPF2 352 aa21.24■□□□□ 0.99
PTPN4-207ENST00000460162 NUDT4Q9NZJ9 180 aa21.24■□□□□ 0.99
PTPN4-207ENST00000460162 APCP25054 2843 aa21.24■□□□□ 0.99
PTPN4-207ENST00000460162 CYR61O00622 381 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 CCNT2O60583 730 aaKnown RBP21.23■□□□□ 0.99
PTPN4-207ENST00000460162 ITGA10O75578 1167 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 ABOP16442 354 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 EPORP19235 508 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 GRNP28799 593 aaKnown RBP21.23■□□□□ 0.99
PTPN4-207ENST00000460162 TNFRSF8P28908 595 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 PPP2R1BP30154 601 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 KCNC1P48547 511 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 SMSP52788 366 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 IRF8Q02556 426 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 NAB1Q13506 487 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 SLMAPQ14BN4 828 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 ELAVL1Q15717 326 aaKnown RBP21.23■□□□□ 0.99
PTPN4-207ENST00000460162 ZNF630Q2M218 657 aaPredicted RBP21.23■□□□□ 0.99
PTPN4-207ENST00000460162 KBTBD12Q3ZCT8 623 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 TMEM156Q8N614 296 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 SRFBP1Q8NEF9 429 aaKnown RBP21.23■□□□□ 0.99
PTPN4-207ENST00000460162 STAG3L4Q8TBR4 150 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 EXT2Q93063 718 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 KCNC2Q96PR1 638 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 CSF3RQ99062 836 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 FBXW2Q9UKT8 454 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 ZNF490Q9ULM2 529 aaPredicted RBP21.23■□□□□ 0.99
PTPN4-207ENST00000460162 MEMO1Q9Y316 297 aa21.23■□□□□ 0.99
PTPN4-207ENST00000460162 GTF3C1Q12789 2109 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 KLRC4-KLRK1H3BQV0 150 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 SLC35E2BP0CK96 405 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 PRF1P14222 555 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 HTR1EP28566 365 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 MEOX1P50221 254 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 GPR143P51810 404 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 PLTPP55058 493 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 CHIT1Q13231 466 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 EFTUD2Q15029 972 aaKnown RBP eCLIP21.22■□□□□ 0.99
PTPN4-207ENST00000460162 HIST2H2ACQ16777 129 aaPredicted RBP21.22■□□□□ 0.99
PTPN4-207ENST00000460162 RNFT1Q5M7Z0 435 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 HIST2H2AA3Q6FI13 130 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 TBC1D1Q86TI0 1168 aaPredicted RBP21.22■□□□□ 0.99
PTPN4-207ENST00000460162 TMEM132CQ8N3T6 1108 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 PPM1NQ8N819 430 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 UBTD2Q8WUN7 234 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 UBE2E3Q969T4 207 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 MS4A8Q9BY19 250 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 CD244Q9BZW8 370 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 ALG9Q9H6U8 611 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 LYRM4Q9HD34 91 aa21.22■□□□□ 0.99
PTPN4-207ENST00000460162 CACNA1CQ13936 2221 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 TFECO14948 347 aaPredicted RBP21.21■□□□□ 0.99
PTPN4-207ENST00000460162 KERAO60938 352 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 ZFAND5O76080 213 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 SERPINB1P30740 379 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 PTGER4P35408 488 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 CASP2P42575 452 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 SSR4P51571 173 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 RAPH1Q70E73 1250 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 CLNKQ7Z7G1 428 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 CMC1Q7Z7K0 106 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 CHERPQ8IWX8 916 aaKnown RBP21.21■□□□□ 0.99
PTPN4-207ENST00000460162 MCEMP1Q8IX19 187 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 GPALPP1Q8IXQ4 340 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 EID3Q8N140 333 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 FBXO25Q8TCJ0 367 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 PHF10Q8WUB8 498 aaKnown RBP21.21■□□□□ 0.99
PTPN4-207ENST00000460162 DAZLQ92904 295 aaKnown RBP21.21■□□□□ 0.99
PTPN4-207ENST00000460162 F2RL3Q96RI0 385 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 NMRAL1Q9HBL8 299 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 PRDM7Q9NQW5 492 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 YARS2Q9Y2Z4 477 aaKnown RBP21.21■□□□□ 0.99
PTPN4-207ENST00000460162 ASB1Q9Y576 335 aa21.21■□□□□ 0.99
PTPN4-207ENST00000460162 CTNSO60931 367 aa21.2■□□□□ 0.98
PTPN4-207ENST00000460162 SCELO95171 688 aa21.2■□□□□ 0.98
PTPN4-207ENST00000460162 CRABP2P29373 138 aa21.2■□□□□ 0.98
PTPN4-207ENST00000460162 MSH2P43246 934 aa21.2■□□□□ 0.98
PTPN4-207ENST00000460162 HSF1Q00613 529 aa21.2■□□□□ 0.98
PTPN4-207ENST00000460162 ISCA2Q86U28 154 aa21.2■□□□□ 0.98
PTPN4-207ENST00000460162 CCDC25Q86WR0 208 aa21.2■□□□□ 0.98
PTPN4-207ENST00000460162 SULF2Q8IWU5 870 aa21.2■□□□□ 0.98
PTPN4-207ENST00000460162 OR14A16Q8NHC5 309 aa21.2■□□□□ 0.98
PTPN4-207ENST00000460162 ZNF473Q8WTR7 871 aaKnown RBP21.2■□□□□ 0.98
PTPN4-207ENST00000460162 ATOH8Q96SQ7 321 aa21.2■□□□□ 0.98
PTPN4-207ENST00000460162 TBCDQ9BTW9 1192 aa21.2■□□□□ 0.98
PTPN4-207ENST00000460162 CLCA3PQ9Y6N3 262 aa21.2■□□□□ 0.98
PTPN4-207ENST00000460162 SPACA6W5XKT8 324 aa21.2■□□□□ 0.98
PTPN4-207ENST00000460162 CSMD1Q96PZ7 3565 aa21.2■□□□□ 0.98
PTPN4-207ENST00000460162 SUPT3HB4E1H0 165 aa21.19■□□□□ 0.98
PTPN4-207ENST00000460162 PRRG2O14669 202 aa21.19■□□□□ 0.98
PTPN4-207ENST00000460162 SUPT3HO75486 399 aa21.19■□□□□ 0.98
PTPN4-207ENST00000460162 IFNA16P05015 189 aa21.19■□□□□ 0.98
PTPN4-207ENST00000460162 LTA4HP09960 611 aaKnown RBP21.19■□□□□ 0.98
PTPN4-207ENST00000460162 CASQ1P31415 396 aa21.19■□□□□ 0.98
PTPN4-207ENST00000460162 MAGEA4P43358 317 aa21.19■□□□□ 0.98
PTPN4-207ENST00000460162 PCDH1Q08174 1060 aa21.19■□□□□ 0.98
PTPN4-207ENST00000460162 SERTAD2Q14140 314 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 73.2 ms