RNA–Protein interactions for RNA: ENST00000455883.2

CSMD3-204, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best) BASIC

Gene CSMD3, Length 12,485 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-204ENST00000455883 PRAMEF13Q5VWM6 474 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 SATL1Q86VE3 508 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 CLDN22Q8N7P3 220 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 OR10T2Q8NGX3 314 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 TMEM68Q96MH6 324 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 IMP3Q9NV31 184 aaKnown RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 COL11A1P12107 1806 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 C5orf51A6NDU8 294 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 NCF1BA6NI72 391 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 NCF1CA8MVU1 366 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 F6UZH7 168 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 EGFP01133 1207 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 SPP1P10451 314 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 EPHX2P34913 555 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 UBAP2LQ14157 1087 aaKnown RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 NADK2Q4G0N4 442 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 CMASQ8NFW8 434 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 OR10G2Q8NGC3 310 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 OR2L8Q8NGY9 312 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 MFSD8Q8NHS3 518 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 FAM174AQ8TBP5 190 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 KAZALD1Q96I82 304 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 SEMA3CQ99985 751 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 OR11A1Q9GZK7 315 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 SLC32A1Q9H598 525 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 ELL3Q9HB65 397 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 PIGVQ9NUD9 493 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 ZNF219Q9P2Y4 722 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 LAMP3Q9UQV4 416 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 WNT9AO14904 365 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 SNAP29O95721 258 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 CSTBP04080 98 aaKnown RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 ITGB1P05556 798 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 DHPSP49366 369 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 PSMA6P60900 246 aaKnown RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 RPS14P62263 151 aaKnown RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 C4orf17Q53FE4 359 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 PHC2Q8IXK0 858 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 SCRN2Q96FV2 425 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 LENG8Q96PV6 779 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 NIFKQ9BYG3 293 aaKnown RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 ALS2Q96Q42 1657 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 SSX5O60225 188 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 RGS9O75916 674 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 KCNK5O95279 499 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 SLC16A8O95907 504 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 HTR1AP08908 422 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 CSNK2A2P19784 350 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 CHATP28329 748 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 VLDLRP98155 873 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 RCAN2Q14206 197 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 KHDC1Q4VXA5 237 aaKnown RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 REP15Q6BDI9 236 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 OGFOD2Q6N063 350 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 CES5AQ6NT32 575 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 ENPP7Q6UWV6 458 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 TPGS1Q6ZTW0 290 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 SAMD12Q8N8I0 201 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 ZNF417Q8TAU3 575 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 RANBP9Q96S59 729 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 KCNJ16Q9NPI9 418 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 COQ3Q9NZJ6 369 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 ARID2Q68CP9 1835 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 SCDO00767 359 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 APBA3O96018 575 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 FABP1P07148 127 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 FHP07954 510 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 ANXA4P09525 319 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 RFC3P40938 356 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 HMGCS2P54868 508 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 PUS10Q3MIT2 529 aaKnown RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 TPGS2Q68CL5 300 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 SLC8B1Q6J4K2 584 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 IDO2Q6ZQW0 420 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 OR7G1Q8NGA0 311 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 TMEM190Q8WZ59 177 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 MUL1Q969V5 352 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 NIPSNAP3BQ9BS92 247 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 TMEM150CB9EJG8 249 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 ZBTB7AO95365 584 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 PAX6P26367 422 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 WNT3AP56704 352 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 RFWD3Q6PCD5 774 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 DET1Q7L5Y6 550 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 AMIGO2Q86SJ2 522 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 CRYBG2Q8N1P7 616 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 TCEANCQ8N8B7 351 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 PAPD5Q8NDF8 572 aaKnown RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 RAB7BQ96AH8 199 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 LURAP1Q96LR2 239 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 PGLYRP2Q96PD5 576 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 CNN2Q99439 309 aaKnown RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 ZFP14Q9HCL3 533 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 OAZ3Q9UMX2 235 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 FAM159BA6NKW6 160 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 TLR4O00206 839 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 NFKBIEO00221 500 aa5.04□□□□□ -1.6
CSMD3-204ENST00000455883 MAFO75444 373 aaPredicted RBP5.04□□□□□ -1.6
CSMD3-204ENST00000455883 TIPRLO75663 272 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms