RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 DOCK9Q9BZ29 2069 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 MYO10Q9HD67 2058 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 PRAMEF25A6NGN4 478 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 GRXCR1A8MXD5 290 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 FAM20BO75063 409 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 CLPXO76031 633 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 GABARAPO95166 117 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 SOAT1P35610 550 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 GGT2P36268 569 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 XCR1P46094 333 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 CLCNKAP51800 687 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 REEP3Q6NUK4 255 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 C7orf61Q8IZ16 206 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 SLC5A8Q8N695 610 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 FNDC8Q8TC99 324 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 RGMAQ96B86 450 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 WDR26Q9H7D7 661 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 NEUROD4Q9HD90 331 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 MBNL1Q9NR56 388 aaKnown RBP14.36□□□□□ -0.11
LDLR-202ENST00000455727 PLCXD1Q9NUJ7 323 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 AASSQ9UDR5 926 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 CFAP20Q9Y6A4 193 aaKnown RBP14.36□□□□□ -0.11
LDLR-202ENST00000455727 DOCK8Q8NF50 2099 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 H7BY64 318 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 TNFRSF1BP20333 461 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 KRT20P35900 424 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 OR1E2P47887 323 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 LIMS1P48059 325 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 GALK1P51570 392 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 SPIBQ01892 262 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 TEKQ02763 1124 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 KIAA1161Q6NSJ0 714 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 LINC00299Q6ZSB3 139 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 MMP21Q8N119 569 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 APH1BQ8WW43 257 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 PRAP1Q96NZ9 151 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 PIP5K1AQ99755 562 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 PALMDQ9NP74 551 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 A4GALTQ9NPC4 353 aa14.36□□□□□ -0.11
LDLR-202ENST00000455727 TRANK1O15050 2925 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 PDPK1O15530 556 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 FOXD2O60548 495 aaPredicted RBP14.35□□□□□ -0.11
LDLR-202ENST00000455727 APODP05090 189 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 RHCEP18577 417 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 MANFP55145 182 aaKnown RBP14.35□□□□□ -0.11
LDLR-202ENST00000455727 CDH12P55289 794 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 PCBP4P57723 403 aaKnown RBP14.35□□□□□ -0.11
LDLR-202ENST00000455727 TRA2BP62995 288 aaKnown RBP14.35□□□□□ -0.11
LDLR-202ENST00000455727 AQP6Q13520 282 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 SMN1Q16637 294 aaKnown RBP14.35□□□□□ -0.11
LDLR-202ENST00000455727 ZNF605Q86T29 641 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 NUDT13Q86X67 352 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 YAF2Q8IY57 180 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 ERLEC1Q96DZ1 483 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 YIPF6Q96EC8 236 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 ACOT13Q9NPJ3 140 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 LHX9Q9NQ69 397 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 NECTIN3Q9NQS3 549 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 RASSF1Q9NS23 344 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 ACER3Q9NUN7 267 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 ENPP4Q9Y6X5 453 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 CCDC88CQ9P219 2028 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 PRAMEF33A0A0G2JMD5 474 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 ARRDC5A6NEK1 342 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 RTCAO00442 366 aaKnown RBP14.35□□□□□ -0.11
LDLR-202ENST00000455727 SLC22A1O15245 554 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 PRAMEF10O60809 474 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 KCNJ13O60928 360 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 MT-ND2P03891 347 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 MASP1P48740 699 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 BMXP51813 675 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 CYP4F2P78329 520 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 CLCA4Q14CN2 919 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 SPCS2Q15005 226 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 MLC1Q15049 377 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 IRF4Q15306 451 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 EXOC3L2Q2M3D2 409 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 C2orf27AQ580R0 203 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 GPR153Q6NV75 609 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 CEACAM20Q6UY09 585 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 LGI4Q8N135 537 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 HDDC3Q8N4P3 179 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 LINC01555Q8NAE3 123 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 TP53I13Q8NBR0 393 aaPredicted RBP14.35□□□□□ -0.11
LDLR-202ENST00000455727 UBE2FQ969M7 185 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 KCNC2Q96PR1 638 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 NRTNQ99748 197 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 TIMM29Q9BSF4 260 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 DDX31Q9H8H2 851 aaKnown RBP14.35□□□□□ -0.11
LDLR-202ENST00000455727 RMI1Q9H9A7 625 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 SLAMF7Q9NQ25 335 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 PHPT1Q9NRX4 125 aaPredicted RBP14.35□□□□□ -0.11
LDLR-202ENST00000455727 TBC1D23Q9NUY8 699 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 TAS2R7Q9NYW3 318 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 RNF6Q9Y252 685 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 FAM32AQ9Y421 112 aaKnown RBP14.35□□□□□ -0.11
LDLR-202ENST00000455727 PCDHGA2Q9Y5H1 932 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 SNX8Q9Y5X2 465 aa14.35□□□□□ -0.11
LDLR-202ENST00000455727 CLEC3AO75596 197 aa14.34□□□□□ -0.11
LDLR-202ENST00000455727 EN2P19622 333 aaPredicted RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms