RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 TENM4Q6N022 2769 aa11.94□□□□□ -0.5
PRPF40A-203ENST00000448428 NBASA2RRP1 2371 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 GOLGA8RI6L899 631 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 MAN1A2O60476 641 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 CTNSO60931 367 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 SHBGP04278 402 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 HIST1H1TP22492 207 aaPredicted RBP11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 PTX3P26022 381 aaPredicted RBP11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 TNFRSF8P28908 595 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 TSFMP43897 325 aaKnown RBP11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 CCNG1P51959 295 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 RPS13P62277 151 aaKnown RBP11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 SRSF1Q07955 248 aaKnown RBP eCLIP11.93□□□□□ -0.52e-15■■■□□ 18.7
PRPF40A-203ENST00000448428 SLC13A2Q13183 592 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 ZRSR2Q15696 482 aaKnown RBP11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 ACER2Q5QJU3 275 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 OR4C11Q6IEV9 310 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 RPS27LQ71UM5 84 aaKnown RBP11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 CRLF3Q8IUI8 442 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 ZNF595Q8IYB9 648 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 KIF2BQ8N4N8 673 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 WDR20Q8TBZ3 569 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 ELP5Q8TE02 316 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 ADAMTS18Q8TE60 1221 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 MZB1Q8WU39 189 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 UBLCP1Q8WVY7 318 aaPredicted RBP11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 ATP6V1E2Q96A05 226 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 RGMAQ96B86 450 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 REPS1Q96D71 796 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 MTFMTQ96DP5 389 aaKnown RBP11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 CSF3RQ99062 836 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 CCDC77Q9BR77 488 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 NTMT1Q9BV86 223 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 RNF32Q9H0A6 362 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 ANKZF1Q9H8Y5 726 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 LYRM4Q9HD34 91 aa11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 SEMA4BQ9NPR2 832 aaPredicted RBP11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 PNO1Q9NRX1 252 aaKnown RBP11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 PSMC3IPQ9P2W1 217 aaPredicted RBP11.93□□□□□ -0.5
PRPF40A-203ENST00000448428 ESPL1Q14674 2120 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 MYOCOSA0A1B0GUC4 107 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 A0A1W2PPM1 405 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 CLEC18AA5D8T8 446 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 OR5H15A6NDH6 313 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 SAGE2PA6NJ88 616 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 A8MT66 165 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 FOXO6A8MYZ6 492 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 PPP6CO00743 305 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 PLPP1O14494 284 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 SCELO95171 688 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 CBX6O95503 412 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 PYGBP11216 843 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 PPP2R1BP30154 601 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 ARL1P40616 181 aaPredicted RBP11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 SSR2P43308 183 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 ST13P50502 369 aaKnown RBP11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 CDH13P55290 713 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 TRAF3Q13114 568 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 SLAMF1Q13291 335 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 MRPL49Q13405 166 aaKnown RBP11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 RCN2Q14257 317 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 MEP1AQ16819 746 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 RPUSD3Q6P087 351 aaKnown RBP11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 CLEC18BQ6UXF7 455 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 CLNKQ7Z7G1 428 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 BEST3Q8N1M1 668 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 CLEC18CQ8NCF0 446 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 ACMSDQ8TDX5 336 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 GRHL3Q8TE85 626 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 CDCP1Q9H5V8 836 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 PSD3Q9NYI0 1048 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 FBXW2Q9UKT8 454 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 MRPS33Q9Y291 106 aaKnown RBP11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 MYO18BQ8IUG5 2567 aa11.92□□□□□ -0.5
PRPF40A-203ENST00000448428 TRAV17A0A0B4J275 112 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 A0A1B0GTL3 188 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 FOXE1O00358 373 aaPredicted RBP11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 DLX3O60479 287 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 MYO1DO94832 1006 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 ETHE1O95571 254 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 RPS17P08708 135 aaKnown RBP11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 TSPAN8P19075 237 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 TAC1P20366 129 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 BSGP35613 385 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 CD96P40200 585 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 RAP1GDS1P52306 607 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 ARFIP1P53367 373 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 TAS2R50P59544 299 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 PHEXP78562 749 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 CUL3Q13618 768 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 UBAP2LQ14157 1087 aaKnown RBP11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 NR6A1Q15406 480 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 EIF2S3LQ2VIR3 472 aaKnown RBP11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 SH2D5Q6ZV89 423 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 MILR1Q7Z6M3 343 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 LCA5Q86VQ0 697 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 RPS19BP1Q86WX3 136 aaKnown RBP11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 SLC5A8Q8N695 610 aa11.91□□□□□ -0.5
PRPF40A-203ENST00000448428 B3GNT7Q8NFL0 401 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 23.8 ms