RNA–Protein interactions for RNA: ENST00000438647.3

RAPGEF1-206, Transcript of Rap guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene RAPGEF1, Length 588 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF1-206ENST00000438647 TBK1Q9UHD2 729 aa23.19■■□□□ 1.3
RAPGEF1-206ENST00000438647 RNF11Q9Y3C5 154 aa23.19■■□□□ 1.3
RAPGEF1-206ENST00000438647 COPG1Q9Y678 874 aaKnown RBP23.19■■□□□ 1.3
RAPGEF1-206ENST00000438647 TRAV17A0A0B4J275 112 aa23.18■■□□□ 1.3
RAPGEF1-206ENST00000438647 BLACEA4D250 179 aa23.18■■□□□ 1.3
RAPGEF1-206ENST00000438647 SAGE2PA6NJ88 616 aa23.18■■□□□ 1.3
RAPGEF1-206ENST00000438647 A8MT66 165 aa23.18■■□□□ 1.3
RAPGEF1-206ENST00000438647 CYR61O00622 381 aa23.18■■□□□ 1.3
RAPGEF1-206ENST00000438647 OR7A17O14581 309 aa23.18■■□□□ 1.3
RAPGEF1-206ENST00000438647 ZNF500O60304 480 aaPredicted RBP23.18■■□□□ 1.3
RAPGEF1-206ENST00000438647 SH3BGRLO75368 114 aa23.18■■□□□ 1.3
RAPGEF1-206ENST00000438647 GSTA1P08263 222 aa23.18■■□□□ 1.3
RAPGEF1-206ENST00000438647 TERF2Q15554 542 aa23.18■■□□□ 1.3
RAPGEF1-206ENST00000438647 ZNF793Q6ZN11 406 aa23.18■■□□□ 1.3
RAPGEF1-206ENST00000438647 TMEM151AQ8N4L1 468 aa23.18■■□□□ 1.3
RAPGEF1-206ENST00000438647 OR52B6Q8NGF0 335 aa23.18■■□□□ 1.3
RAPGEF1-206ENST00000438647 C1QTNF3Q9BXJ4 246 aa23.18■■□□□ 1.3
RAPGEF1-206ENST00000438647 PSD3Q9NYI0 1048 aa23.18■■□□□ 1.3
RAPGEF1-206ENST00000438647 RELNP78509 3460 aa23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 FOXE1O00358 373 aaPredicted RBP23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 RTCAO00442 366 aaKnown RBP23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 RPS17P08708 135 aaKnown RBP23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 TNFSF10P50591 281 aa23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 RPS13P62277 151 aaKnown RBP23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 ZRSR2Q15696 482 aaKnown RBP23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 MEP1AQ16819 746 aa23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 ACER2Q5QJU3 275 aa23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 OR4C11Q6IEV9 310 aa23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 C7orf57Q8NEG2 295 aa23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 SUN3Q8TAQ9 357 aa23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 ANKZF1Q9H8Y5 726 aa23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 AGPAT4Q9NRZ5 378 aa23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 MS4A12Q9NXJ0 267 aa23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 PLA2G3Q9NZ20 509 aa23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 TMEM216Q9P0N5 145 aa23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 PPT2Q9UMR5 302 aa23.17■■□□□ 1.3
RAPGEF1-206ENST00000438647 OR5H15A6NDH6 313 aa23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 SAP18O00422 153 aaKnown RBP23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 WDPCPO95876 746 aa23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 OTCP00480 354 aa23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 SBK3P0C264 359 aa23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 CUL3Q13618 768 aa23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 GGTA1PQ4G0N0 100 aa23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 RPUSD3Q6P087 351 aaKnown RBP23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 TDRPQ86YL5 185 aa23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 LGI4Q8N135 537 aa23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 CATSPER1Q8NEC5 780 aa23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 OR1N1Q8NGS0 311 aa23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 WDR20Q8TBZ3 569 aa23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 ELP5Q8TE02 316 aa23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 NSUN5Q96P11 429 aaKnown RBP23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 CDK15Q96Q40 435 aa23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 CSF3RQ99062 836 aa23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 ZBTB26Q9HCK0 441 aa23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 SEMA4BQ9NPR2 832 aaPredicted RBP23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 KCMF1Q9P0J7 381 aa23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 DCDC2Q9UHG0 476 aa23.16■■□□□ 1.3
RAPGEF1-206ENST00000438647 GOLGA8RI6L899 631 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 CTNSO60931 367 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 SHBGP04278 402 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 PYGBP11216 843 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 HNRNPFP52597 415 aaKnown RBP23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 HERVK_113P63132 956 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 TRAF3Q13114 568 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 FRG2Q64ET8 278 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 TTC19Q6DKK2 380 aaPredicted RBP23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 MILR1Q7Z6M3 343 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 SLC22A9Q8IVM8 553 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 ZCCHC7Q8N3Z6 543 aaKnown RBP23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 RNF175Q8N4F7 328 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 AMER2Q8N7J2 671 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 TMEM52Q8NDY8 209 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 ZNF483Q8TF39 744 aaPredicted RBP23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 MZB1Q8WU39 189 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 C19orf60Q96EN9 201 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 FRG2BQ96QU4 278 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 MAPKAP1Q9BPZ7 522 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 ERVK-6Q9BXR3 956 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 ADAP2Q9NPF8 381 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 PNO1Q9NRX1 252 aaKnown RBP23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 ASF1BQ9NVP2 202 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 CPAMD8Q8IZJ3 1885 aa23.15■■□□□ 1.3
RAPGEF1-206ENST00000438647 A8MUA0 341 aa23.14■■□□□ 1.29
RAPGEF1-206ENST00000438647 PLPP1O14494 284 aa23.14■■□□□ 1.29
RAPGEF1-206ENST00000438647 CDK2AP1O14519 115 aa23.14■■□□□ 1.29
RAPGEF1-206ENST00000438647 MYO1DO94832 1006 aa23.14■■□□□ 1.29
RAPGEF1-206ENST00000438647 KRT15P19012 456 aa23.14■■□□□ 1.29
RAPGEF1-206ENST00000438647 CPN2P22792 545 aa23.14■■□□□ 1.29
RAPGEF1-206ENST00000438647 ATP5F1P24539 256 aaPredicted RBP23.14■■□□□ 1.29
RAPGEF1-206ENST00000438647 STX4Q12846 297 aa23.14■■□□□ 1.29
RAPGEF1-206ENST00000438647 IFT88Q13099 833 aa23.14■■□□□ 1.29
RAPGEF1-206ENST00000438647 SLAMF1Q13291 335 aa23.14■■□□□ 1.29
RAPGEF1-206ENST00000438647 SERTAD2Q14140 314 aa23.14■■□□□ 1.29
RAPGEF1-206ENST00000438647 RASA2Q15283 850 aa23.14■■□□□ 1.29
RAPGEF1-206ENST00000438647 INAQ16352 499 aa23.14■■□□□ 1.29
RAPGEF1-206ENST00000438647 CRLF3Q8IUI8 442 aa23.14■■□□□ 1.29
RAPGEF1-206ENST00000438647 B3GNT7Q8NFL0 401 aa23.14■■□□□ 1.29
RAPGEF1-206ENST00000438647 SERPINI1Q99574 410 aa23.14■■□□□ 1.29
RAPGEF1-206ENST00000438647 PHF11Q9UIL8 331 aa23.14■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms