RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 CHI3L1P36222 383 aaPredicted RBP9.05□□□□□ -0.96
CUX1-206ENST00000437600 CRISP3P54108 245 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 NUP107P57740 925 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 RELAQ04206 551 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 SP140Q13342 867 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 ITGADQ13349 1161 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 SMU1Q2TAY7 513 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 SOWAHCQ53LP3 525 aaPredicted RBP9.05□□□□□ -0.96
CUX1-206ENST00000437600 GTF2IRD2BQ6EKJ0 949 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 SHQ1Q6PI26 577 aaKnown RBP9.05□□□□□ -0.96
CUX1-206ENST00000437600 CBLL1Q75N03 491 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 GTF2IRD2Q86UP8 949 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 ANKRD13BQ86YJ7 626 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 HIPK1Q86Z02 1210 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 CROCCP3Q8IVE0 287 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 SVOPLQ8N434 492 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 SLC44A3Q8N4M1 653 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 SLC5A8Q8N695 610 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 PJA1Q8NG27 643 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 OR9A1PQ8NGU1 263 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 HLA-CQ95604 372 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 C7orf34Q96L11 122 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 ZDHHC5Q9C0B5 715 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 FBXL12Q9NXK8 326 aa9.05□□□□□ -0.96
CUX1-206ENST00000437600 A0A1W2PPC1 479 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 ANKDD1BA6NHY2 528 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 SERPINB7O75635 380 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 SEC14L2O76054 403 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 AP2A2O94973 939 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 BCL10O95999 233 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 IGFBP1P08833 259 aaPredicted RBP9.04□□□□□ -0.96
CUX1-206ENST00000437600 RXRGP48443 463 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 MVDP53602 400 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 HSPB3Q12988 150 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 COL19A1Q14993 1142 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 CDKL4Q5MAI5 379 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 PTCRAQ6ISU1 281 aaPredicted RBP9.04□□□□□ -0.96
CUX1-206ENST00000437600 METTL2BQ6P1Q9 378 aaKnown RBP9.04□□□□□ -0.96
CUX1-206ENST00000437600 DGLUCYQ7Z3D6 616 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 DSG4Q86SJ6 1040 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 MEX3DQ86XN8 651 aaKnown RBP9.04□□□□□ -0.96
CUX1-206ENST00000437600 PSD4Q8NDX1 1056 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 ANKK1Q8NFD2 765 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 NDNFQ8TB73 568 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 DOK4Q8TEW6 326 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 C16orf78Q8WTQ4 265 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 ATL1Q8WXF7 558 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 HDAC2Q92769 488 aaKnown RBP9.04□□□□□ -0.96
CUX1-206ENST00000437600 PPCDCQ96CD2 204 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 HHIPQ96QV1 700 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 YIPF4Q9BSR8 244 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 RSPO3Q9BXY4 272 aaPredicted RBP9.04□□□□□ -0.96
CUX1-206ENST00000437600 ASPSCR1Q9BZE9 553 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 NDUFAF4Q9P032 175 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 KLHL42Q9P2K6 505 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 DYRK1BQ9Y463 629 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 CACNA1IQ9P0X4 2223 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 HTR3EA5X5Y0 456 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 OR52A4PA6NMU1 304 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 CBFA2T3O75081 653 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 EGFP01133 1207 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 MT-ND2P03891 347 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 ACP5P13686 325 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 POU3F3P20264 500 aaPredicted RBP9.04□□□□□ -0.96
CUX1-206ENST00000437600 DNAJA1P31689 397 aaKnown RBP9.04□□□□□ -0.96
CUX1-206ENST00000437600 CLCNKAP51800 687 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 NCS1P62166 190 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 CSTF3Q12996 717 aaKnown RBP9.04□□□□□ -0.96
CUX1-206ENST00000437600 ZNF750Q32MQ0 723 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 LEXMQ3ZCV2 418 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 IQCCQ4KMZ1 466 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 TMEM196Q5HYL7 178 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 KDM4DQ6B0I6 523 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 TMIGD1Q6UXZ0 262 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 EIF3MQ7L2H7 374 aaKnown RBP9.04□□□□□ -0.96
CUX1-206ENST00000437600 VN1R5Q7Z5H4 357 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 NLRP8Q86W28 1048 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 RBM45Q8IUH3 476 aaKnown RBP9.04□□□□□ -0.96
CUX1-206ENST00000437600 ALDH16A1Q8IZ83 802 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 SYNPOQ8N3V7 929 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 FRMD1Q8N878 549 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 ANKRD53Q8N9V6 530 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 GLMNQ92990 594 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 EXOSC8Q96B26 276 aaKnown RBP9.04□□□□□ -0.96
CUX1-206ENST00000437600 TAMM41Q96BW9 452 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 RNF167Q9H6Y7 350 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 SLAMF7Q9NQ25 335 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 TAS2R16Q9NYV7 291 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 ZFR2Q9UPR6 939 aaKnown RBP9.04□□□□□ -0.96
CUX1-206ENST00000437600 KCNK6Q9Y257 313 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 PIAS3Q9Y6X2 628 aa9.04□□□□□ -0.96
CUX1-206ENST00000437600 TBC1D3DA0A087WVF3 549 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 TBC1D3IA0A087WXS9 549 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 TBC1D3EA0A087X179 549 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 TBC1D3KA0A087X1G2 549 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 TBC1D3FA6NER0 549 aaPredicted RBP9.03□□□□□ -0.96
CUX1-206ENST00000437600 TBC1D3LB9A6J9 549 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 PSMD11O00231 422 aa9.03□□□□□ -0.96
CUX1-206ENST00000437600 LCMT2O60294 686 aaKnown RBP9.03□□□□□ -0.96
CUX1-206ENST00000437600 PRAMEF10O60809 474 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms