RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 FAM227AF5H4B4 570 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 KLF11O14901 512 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 CD63P08962 238 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 IL10P22301 178 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 PRPH2P23942 346 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 TPP2P29144 1249 aaPredicted RBP11.71□□□□□ -0.53
USP40-205ENST00000430158 HMOX2P30519 316 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 XCR1P46094 333 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 SLC1A6P48664 564 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 HNRNPFP52597 415 aaKnown RBP11.71□□□□□ -0.53
USP40-205ENST00000430158 UCNP55089 124 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 LIM2P55344 173 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 PPP2R2AP63151 447 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 RAE1P78406 368 aaKnown RBP11.71□□□□□ -0.53
USP40-205ENST00000430158 PHEXP78562 749 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 HMGCS1Q01581 520 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 OCRLQ01968 901 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 RHAGQ02094 409 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 TGM3Q08188 693 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 VAC14Q08AM6 782 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 STX3Q13277 289 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 ERV3-1Q14264 604 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 SSPNQ14714 243 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 KIAA0040Q15053 153 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 CCDC81Q6ZN84 652 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 SHISA6Q6ZSJ9 500 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 TMEM52Q8NDY8 209 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 OR2T11Q8NH01 316 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 RAB3IL1Q8TBN0 382 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 MIEF2Q96C03 454 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 PEX11GQ96HA9 241 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 OR1F2PQ96R84 312 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 MAPKAP1Q9BPZ7 522 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 MRPL1Q9BYD6 325 aaKnown RBP11.71□□□□□ -0.53
USP40-205ENST00000430158 ROGDIQ9GZN7 287 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 VN1R1Q9GZP7 353 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 SOX17Q9H6I2 414 aaPredicted RBP11.71□□□□□ -0.53
USP40-205ENST00000430158 EML4Q9HC35 981 aaKnown RBP11.71□□□□□ -0.53
USP40-205ENST00000430158 VPS29Q9UBQ0 182 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 GPN3Q9UHW5 284 aaPredicted RBP11.71□□□□□ -0.53
USP40-205ENST00000430158 ADAM29Q9UKF5 820 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 HS3ST3B1Q9Y662 390 aa11.71□□□□□ -0.53
USP40-205ENST00000430158 NUP214P35658 2090 aaPredicted RBP11.71□□□□□ -0.54
USP40-205ENST00000430158 FAM208BQ5VWN6 2430 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 LOC102723996A0A087X1L8 192 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 IGKV3D-11A0A0A0MRZ8 115 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 ZNF891A8MT65 544 aaPredicted RBP11.7□□□□□ -0.54
USP40-205ENST00000430158 SOCS6O14544 535 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 DYNC1I1O14576 645 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 B3GALT2O43825 422 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 JUNP05412 331 aaKnown RBP11.7□□□□□ -0.54
USP40-205ENST00000430158 FHP07954 510 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 RNH1P13489 461 aaKnown RBP11.7□□□□□ -0.54
USP40-205ENST00000430158 MMP11P24347 488 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 HNRNPH2P55795 449 aaKnown RBP11.7□□□□□ -0.54
USP40-205ENST00000430158 TMPRSS3P57727 454 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 RAB38P57729 211 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 SKP1P63208 163 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 KCNC4Q03721 635 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 OCA2Q04671 838 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 AP5B1Q2VPB7 878 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 TUBB8Q3ZCM7 444 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 XKR7Q5GH72 579 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 SH2D4BQ5SQS7 431 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 GALNT18Q6P9A2 607 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 TMEM205Q6UW68 189 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 COMMD6Q7Z4G1 85 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 SCUBE1Q8IWY4 988 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 ZNF781Q8N8C0 355 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 PLPP5Q8NEB5 264 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 SREK1Q8WXA9 508 aaKnown RBP11.7□□□□□ -0.54
USP40-205ENST00000430158 ZNF75CPQ92670 426 aaPredicted RBP11.7□□□□□ -0.54
USP40-205ENST00000430158 TBC1D20Q96BZ9 403 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 APIPQ96GX9 242 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 FAR2Q96K12 515 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 FCRL1Q96LA6 429 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 CSF3RQ99062 836 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 PAIP2Q9BPZ3 127 aaKnown RBP11.7□□□□□ -0.54
USP40-205ENST00000430158 SLC12A4Q9UP95 1085 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 PADI2Q9Y2J8 665 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 RAP2CQ9Y3L5 183 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 ATG4BQ9Y4P1 393 aa11.7□□□□□ -0.54
USP40-205ENST00000430158 A0A088AWK7 358 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 IDSB3KWA1 339 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 TGFBR3LH3BV60 316 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 PROM1O43490 865 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 SNUPNO95149 360 aaKnown RBP11.69□□□□□ -0.54
USP40-205ENST00000430158 CYC1P08574 325 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 ZNF10P21506 573 aaPredicted RBP11.69□□□□□ -0.54
USP40-205ENST00000430158 FOLR3P41439 243 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 SSR2P43308 183 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 RAP1GDS1P52306 607 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 BTG2P78543 158 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 MC1RQ01726 317 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 CDC20Q12834 499 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 SLAMF1Q13291 335 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 BROXQ5VW32 411 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 KIRREL2Q6UWL6 708 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 MRGPREQ86SM8 312 aa11.69□□□□□ -0.54
USP40-205ENST00000430158 PRSS58Q8IYP2 241 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms