RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ALDH6A1Q02252 535 aaKnown RBP12.78□□□□□ -0.36
VPS54-203ENST00000409558 ST3GAL4Q11206 333 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 SYPL1Q16563 259 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 TIGD6Q17RP2 521 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 GGTA1PQ4G0N0 100 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 PTCHD4Q6ZW05 846 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 GPR65Q8IYL9 337 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 ZCCHC2Q9C0B9 1178 aaKnown RBP12.78□□□□□ -0.36
VPS54-203ENST00000409558 ATAD3AQ9NVI7 634 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 H0YIV9 168 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 LRRTM2O43300 516 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 LCMT2O60294 686 aaKnown RBP12.78□□□□□ -0.36
VPS54-203ENST00000409558 CPNE6O95741 557 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 CH25HO95992 272 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 EIF2S1P05198 315 aaKnown RBP12.78□□□□□ -0.36
VPS54-203ENST00000409558 SELENOWP63302 87 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 CLEC12AQ5QGZ9 265 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 TRIM40Q6P9F5 258 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 SHFQ7M4L6 423 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 OR4N5Q8IXE1 308 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 TMEFF1Q8IYR6 380 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 OR8K5Q8NH50 307 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 OR56A3Q8NH54 315 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 MCFD2Q8NI22 146 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 ZNF420Q8TAQ5 688 aaPredicted RBP12.78□□□□□ -0.36
VPS54-203ENST00000409558 RAD51AP1Q96B01 352 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 LGALS12Q96DT0 336 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 TRIT1Q9H3H1 467 aaKnown RBP12.78□□□□□ -0.36
VPS54-203ENST00000409558 PCDHGA6Q9Y5G7 932 aa12.78□□□□□ -0.36
VPS54-203ENST00000409558 WWP2O00308 870 aa12.77□□□□□ -0.36
VPS54-203ENST00000409558 WBP4O75554 376 aaKnown RBP12.77□□□□□ -0.36
VPS54-203ENST00000409558 NR2F1P10589 423 aa12.77□□□□□ -0.36
VPS54-203ENST00000409558 EN2P19622 333 aaPredicted RBP12.77□□□□□ -0.36
VPS54-203ENST00000409558 CD6P30203 668 aa12.77□□□□□ -0.36
VPS54-203ENST00000409558 TMBIM6P55061 237 aa12.77□□□□□ -0.36
VPS54-203ENST00000409558 LASP1Q14847 261 aaKnown RBP12.77□□□□□ -0.36
VPS54-203ENST00000409558 GTF2IRD2BQ6EKJ0 949 aa12.77□□□□□ -0.36
VPS54-203ENST00000409558 GTF2IRD2Q86UP8 949 aa12.77□□□□□ -0.36
VPS54-203ENST00000409558 MUL1Q969V5 352 aa12.77□□□□□ -0.36
VPS54-203ENST00000409558 RAD9AQ99638 391 aa12.77□□□□□ -0.36
VPS54-203ENST00000409558 ZDHHC5Q9C0B5 715 aa12.77□□□□□ -0.36
VPS54-203ENST00000409558 IL23AQ9NPF7 189 aa12.77□□□□□ -0.36
VPS54-203ENST00000409558 C8orf4Q9NR00 106 aa12.77□□□□□ -0.36
VPS54-203ENST00000409558 ZNF282Q9UDV7 671 aaPredicted RBP12.77□□□□□ -0.36
VPS54-203ENST00000409558 TRBV4-1A0A0J9YWV2 114 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 GRXCR2A6NFK2 248 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 PLPP1O14494 284 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 FURINP09958 794 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 ALOX12P18054 663 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 SERPINB10P48595 397 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 TGM4P49221 684 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 CTF1Q16619 201 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 ERICH5Q6P6B1 374 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 VITQ6UXI7 678 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 ANKRD53Q8N9V6 530 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 ACOT13Q9NPJ3 140 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 TAAR2Q9P1P5 351 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 IRAK3Q9Y616 596 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 TBC1D3DA0A087WVF3 549 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 TBC1D3IA0A087WXS9 549 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 TBC1D3EA0A087X179 549 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 TBC1D3KA0A087X1G2 549 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 LINC01553A4QN01 128 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 TBC1D3FA6NER0 549 aaPredicted RBP12.77□□□□□ -0.37
VPS54-203ENST00000409558 ZNF860A6NHJ4 632 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 TBC1D3LB9A6J9 549 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 SPINT1O43278 529 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 HYAL3O43820 417 aaPredicted RBP12.77□□□□□ -0.37
VPS54-203ENST00000409558 GASTP01350 101 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 TBC1D3HP0C7X1 549 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 CLDN2P57739 230 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 DSTNP60981 165 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 MTAPQ13126 283 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 RFX4Q33E94 735 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 TBC1D3GQ6DHY5 549 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 TBC1D3CQ6IPX1 549 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 ERN2Q76MJ5 926 aaKnown RBP12.77□□□□□ -0.37
VPS54-203ENST00000409558 DSG4Q86SJ6 1040 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 YAF2Q8IY57 180 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 TBC1D3Q8IZP1 549 aaPredicted RBP12.77□□□□□ -0.37
VPS54-203ENST00000409558 SYNPOQ8N3V7 929 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 PJA1Q8NG27 643 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 WDR36Q8NI36 951 aaKnown RBP12.77□□□□□ -0.37
VPS54-203ENST00000409558 TMEM19Q96HH6 336 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 C7orf34Q96L11 122 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 ALPK1Q96QP1 1244 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 DCSTAMPQ9H295 470 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 SEC14L3Q9UDX4 400 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 ENPP5Q9UJA9 477 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 PPIL1Q9Y3C6 166 aa12.77□□□□□ -0.37
VPS54-203ENST00000409558 TCF20Q9UGU0 1960 aaKnown RBP12.77□□□□□ -0.37
VPS54-203ENST00000409558 KLHL33A6NCF5 533 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 ISM1B1AKI9 464 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 AP2A2O94973 939 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 CNR2P34972 360 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 PTPN5P54829 565 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 SLC35A2P78381 396 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 HNRNPA1L2Q32P51 320 aaKnown RBP12.76□□□□□ -0.37
VPS54-203ENST00000409558 DEPDC1Q5TB30 811 aa12.76□□□□□ -0.37
VPS54-203ENST00000409558 SHISA5Q8N114 240 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms