RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 CCDC163A0A0D9SF12 145 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 PTGES3LE9PB15 166 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 TIMP2P16035 220 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 CEBPBP17676 345 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 RPL10P27635 214 aaKnown RBP3.25□□□□□ -1.89
VPS13C-203ENST00000395896 RPL6Q02878 288 aaKnown RBP3.25□□□□□ -1.89
VPS13C-203ENST00000395896 MTAPQ13126 283 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 FAM53BQ14153 422 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 ABRAXAS2Q15018 415 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 DECR1Q16698 335 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 DNM1P34Q6PK57 102 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 NAPRTQ6XQN6 538 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 ZNF730Q6ZMV8 503 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 C12orf40Q86WS4 652 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 TREML1Q86YW5 311 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 SPPL2CQ8IUH8 684 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 ETFBKMTQ8IXQ9 262 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 CDRT4Q8N9R6 151 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 CHST14Q8NCH0 376 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 MDGA1Q8NFP4 955 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 PIGXQ8TBF5 258 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 MTFMTQ96DP5 389 aaKnown RBP3.25□□□□□ -1.89
VPS13C-203ENST00000395896 C1QTNF1Q9BXJ1 281 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 TRIM2Q9C040 744 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 MYNNQ9NPC7 610 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 SLC35C2Q9NQQ7 365 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 KCTD3Q9Y597 815 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 BCKDKO14874 412 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 PPM1BO75688 479 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 CD2P06729 351 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 MMP2P08253 660 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 CD38P28907 300 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 TRIM23P36406 574 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 RAB6CQ53S08 254 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 LETMD1Q6P1Q0 360 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 ASPGQ86U10 573 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 NPLQ9BXD5 320 aaPredicted RBP3.25□□□□□ -1.89
VPS13C-203ENST00000395896 RAB6CQ9H0N0 254 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 HCN3Q9P1Z3 774 aa3.25□□□□□ -1.89
VPS13C-203ENST00000395896 TSPAN11A1L157 253 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 SCDO00767 359 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 AHCYL1O43865 530 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 CSTF2P33240 577 aaKnown RBP eCLIP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 MINDY4Q4G0A6 757 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 ANKRD46Q86W74 232 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 KLHDC8AQ8IYD2 350 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 ALDH16A1Q8IZ83 802 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 SPEM1Q8N4L4 309 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 CENPEQ02224 2701 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 THSD7BQ9C0I4 1608 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 SERTM1A2A2V5 107 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 TLX3O43711 291 aaPredicted RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 TRMUO75648 421 aaKnown RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 SNAPC5O75971 98 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 LYNP07948 512 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 ETS2P15036 469 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 CD6P30203 668 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 OLIG2Q13516 323 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 CLPPQ16740 277 aaPredicted RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 TICAM1Q8IUC6 712 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 CRIPAKQ8N1N5 446 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 SMYD1Q8NB12 490 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 OR56A3Q8NH54 315 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 KLHL6Q8WZ60 621 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 GAL3ST3Q96A11 431 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 ZFYVE21Q9BQ24 234 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 POLR2J2Q9GZM3 115 aaKnown RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 POLR2J3Q9H1A7 115 aaKnown RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 CERS4Q9HA82 394 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 PALMDQ9NP74 551 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 C1GALT1Q9NS00 363 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 MGAT4BQ9UQ53 548 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 USP9XQ93008 2570 aaPredicted RBP3.24□□□□□ -1.89
VPS13C-203ENST00000395896 USP34Q70CQ2 3546 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 IQCF5A8MTL0 148 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 RGS5O15539 181 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 CDK4P11802 303 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 PEX2P28328 305 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 DCAF7P61962 342 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 DMPKQ09013 629 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 NPTX1Q15818 432 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 PAMR1Q6UXH9 720 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 CEP68Q76N32 757 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 BBS10Q8TAM1 723 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 CDK15Q96Q40 435 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 POLE3Q9NRF9 147 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 A0A0G2JPF8 293 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 SLC5A10A0PJK1 596 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 HNRNPCL3B7ZW38 293 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 TAF4O00268 1085 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 MTX2O75431 263 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 GADD45GO95257 159 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 HNRNPCL4P0DMR1 293 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 SPIBQ01892 262 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 ITGADQ13349 1161 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 OR4D1Q15615 310 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 NDUFAF5Q5TEU4 345 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 CCDC81Q6ZN84 652 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 KMT5CQ86Y97 462 aa3.24□□□□□ -1.89
VPS13C-203ENST00000395896 TP53INP2Q8IXH6 220 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms