RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 ACOT13Q9NPJ3 140 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 CORO2BQ9UQ03 480 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 PLEKHM1Q9Y4G2 1056 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 PCDHGB3Q9Y5G1 929 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 IGKV1-8A0A0C4DH67 115 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 FAM227AF5H4B4 570 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 MID1O15344 667 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 PI15O43692 258 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 LCMT2O60294 686 aaKnown RBP12.76□□□□□ -0.37
CCDC3-202ENST00000378839 STATHP02808 62 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 CDH12P55289 794 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 FCHO2Q0JRZ9 810 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 PUM1Q14671 1186 aaKnown RBP eCLIP12.76□□□□□ -0.37
CCDC3-202ENST00000378839 MLF2Q15773 248 aaPredicted RBP12.76□□□□□ -0.37
CCDC3-202ENST00000378839 HIST2H2ACQ16777 129 aaPredicted RBP12.76□□□□□ -0.37
CCDC3-202ENST00000378839 ZNF829Q3KNS6 432 aaPredicted RBP12.76□□□□□ -0.37
CCDC3-202ENST00000378839 AGBL4Q5VU57 503 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 METRNLQ641Q3 311 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 HIST2H2AA3Q6FI13 130 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 GET4Q7L5D6 327 aaPredicted RBP12.76□□□□□ -0.37
CCDC3-202ENST00000378839 ZNF554Q86TJ5 538 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 ZNF540Q8NDQ6 660 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 SETD9Q8NE22 299 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 ABHD11Q8NFV4 315 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 SETD7Q8WTS6 366 aaKnown RBP12.76□□□□□ -0.37
CCDC3-202ENST00000378839 RPL3LQ92901 407 aaKnown RBP12.76□□□□□ -0.37
CCDC3-202ENST00000378839 ZNF514Q96K75 400 aaPredicted RBP12.76□□□□□ -0.37
CCDC3-202ENST00000378839 HDAC8Q9BY41 377 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 PCDHGA2Q9Y5H1 932 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 HSPE1-MOB4S4R3N1 261 aa12.76□□□□□ -0.37
CCDC3-202ENST00000378839 TOR1BO14657 336 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 FFAR1O14842 300 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 TMPRSS11DO60235 418 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 HOXB3P14651 431 aaPredicted RBP12.75□□□□□ -0.37
CCDC3-202ENST00000378839 PTX3P26022 381 aaPredicted RBP12.75□□□□□ -0.37
CCDC3-202ENST00000378839 C21orf33P30042 268 aaPredicted RBP12.75□□□□□ -0.37
CCDC3-202ENST00000378839 CHI3L1P36222 383 aaPredicted RBP12.75□□□□□ -0.37
CCDC3-202ENST00000378839 LIMS1P48059 325 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 CXCR4P61073 352 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 DGCR6Q14129 220 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 CLCA4Q14CN2 919 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 MOGQ16653 247 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 Q6ZNX1 250 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 UBE2Q1Q7Z7E8 422 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 HORMAD2Q8N7B1 307 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 OR5K2Q8NHB8 316 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 GIPC3Q8TF64 312 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 SYNPO2LQ9H987 977 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 ACER3Q9NUN7 267 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 A0A0G2JN53 185 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 CLPXO76031 633 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 RB1P06400 928 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 POU2F2P09086 479 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 EN2P19622 333 aaPredicted RBP12.75□□□□□ -0.37
CCDC3-202ENST00000378839 GJA4P35212 333 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 SOAT1P35610 550 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 OPRL1P41146 370 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 DGKEP52429 567 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 VBP1P61758 197 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 CD300CQ08708 224 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 DOC2BQ14184 412 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 GANABQ14697 944 aaKnown RBP12.75□□□□□ -0.37
CCDC3-202ENST00000378839 TEAD4Q15561 434 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 AHSA2Q719I0 299 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 RAD51AP1Q96B01 352 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 PPP1R16AQ96I34 528 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 PLEKHA8Q96JA3 519 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 APOL4Q9BPW4 351 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 MACROD1Q9BQ69 325 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 ATAD3AQ9NVI7 634 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 ZNF226Q9NYT6 803 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 THAP10Q9P2Z0 257 aaPredicted RBP12.75□□□□□ -0.37
CCDC3-202ENST00000378839 SNX8Q9Y5X2 465 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 FAM20BO75063 409 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 GABARAPO95166 117 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 POU2F1P14859 743 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 KELP23276 732 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 PTGER1P34995 402 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 TGFBR2P37173 567 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 SPIBQ01892 262 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 COL9A2Q14055 689 aaPredicted RBP12.75□□□□□ -0.37
CCDC3-202ENST00000378839 EIF4HQ15056 248 aaKnown RBP12.75□□□□□ -0.37
CCDC3-202ENST00000378839 IFI44LQ53G44 452 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 CRB2Q5IJ48 1285 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 SYT6Q5T7P8 510 aaPredicted RBP12.75□□□□□ -0.37
CCDC3-202ENST00000378839 KHDRBS2Q5VWX1 349 aaKnown RBP12.75□□□□□ -0.37
CCDC3-202ENST00000378839 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.75□□□□□ -0.37
CCDC3-202ENST00000378839 ZNF605Q86T29 641 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 DCUN1D3Q8IWE4 304 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 TP53I13Q8NBR0 393 aaPredicted RBP12.75□□□□□ -0.37
CCDC3-202ENST00000378839 OR10G2Q8NGC3 310 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 PHOSPHO2Q8TCD6 241 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 APOBEC4Q8WW27 367 aaKnown RBP12.75□□□□□ -0.37
CCDC3-202ENST00000378839 SUSD6Q92537 303 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 PROX1Q92786 737 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 MS4A8Q9BY19 250 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 RHBGQ9H310 441 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 RAD21L1Q9H4I0 556 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 SERHL2Q9H4I8 314 aa12.75□□□□□ -0.37
CCDC3-202ENST00000378839 XKR8Q9H6D3 395 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms