RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 NRG1Q02297 640 aaPredicted RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 RFTN1Q14699 578 aaPredicted RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 KCNJ8Q15842 424 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 ADIRFQ15847 76 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 GRIK4Q16099 956 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 RAVER1Q8IY67 606 aaKnown RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 RASGEF1CQ8N431 466 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 TFGQ92734 400 aaPredicted RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 CLIP3Q96DZ5 547 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 NELL2Q99435 816 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 PKP2Q99959 881 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 DHRS9Q9BPW9 319 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 SOHLH2Q9NX45 425 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 TSPAN16Q9UKR8 245 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 TP53TG5Q9Y2B4 290 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 CDC42BPGQ6DT37 1551 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 A0A1B0GV50 99 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 ERVV-1B6SEH8 477 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 K7ERU9 68 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 HTRA2O43464 458 aaPredicted RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 CNTN5O94779 1100 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 TRUB2O95900 331 aaKnown RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 HOXD10P28358 340 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 CASP9P55211 416 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 GLO1Q04760 184 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 GTF3C2Q8WUA4 911 aaPredicted RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 FOXRED1Q96CU9 486 aaPredicted RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 ZDHHC15Q96MV8 337 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 FCRL3Q96P31 734 aaPredicted RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 TBX5Q99593 518 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 COPS8Q99627 209 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 MTIF3Q9H2K0 278 aaKnown RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 FBXO5Q9UKT4 447 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 USP42Q9H9J4 1324 aaKnown RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 SLC22A20A6NK97 555 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 CKMP06732 381 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 DNAJB1P25685 340 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 DUSP7Q16829 419 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 DOK7Q18PE1 504 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 CLEC12AQ5QGZ9 265 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 LIPKQ5VXJ0 399 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 ZNF679Q8IYX0 411 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 COX18Q8N8Q8 333 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 OR6T1Q8NGN1 323 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 GAR1Q9NY12 217 aaKnown RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 SAMD9LQ8IVG5 1584 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 WASH4PA8MWX3 477 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 ACOT7O00154 380 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 ALX3O95076 343 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 ANXA4P09525 319 aaPredicted RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 SYN1P17600 705 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 TAGLN2P37802 199 aaKnown RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 TGM4P49221 684 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 ST3GAL3Q11203 375 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 GPR19Q15760 415 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 ATAT1Q5SQI0 421 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 TTLL10Q6ZVT0 673 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 IGFN1Q86VF2 1251 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 HORMAD2Q8N7B1 307 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 AVL9Q8NBF6 648 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 SGK3Q96BR1 496 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 SLC35G5Q96KT7 338 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 UHRF1Q96T88 793 aaPredicted RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 VAMP8Q9BV40 100 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 ACOT13Q9NPJ3 140 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 WIF1Q9Y5W5 379 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 NPFFR2Q9Y5X5 522 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 D6RAR5 112 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 F5H6K3 240 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 CD44P16070 742 aaKnown RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 CREB1P16220 341 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 HOXA9P31269 272 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 HLCSP50747 726 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 KLRC3Q07444 240 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 MAMLD1Q13495 774 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 KIAA0141Q14154 515 aaPredicted RBP8.45□□□□□ -1.06
LIG3-202ENST00000378526 ATP6AP1Q15904 470 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 HLFQ16534 295 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 TMEM183BQ1AE95 376 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 PRSS48Q7RTY5 328 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 PRELID2Q8N945 189 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 SEMA6BQ9H3T3 888 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 SCPEP1Q9HB40 452 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 DKKL1Q9UK85 242 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 OTOFQ9HC10 1997 aa8.45□□□□□ -1.06
LIG3-202ENST00000378526 HYKKA2RU49 373 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 BTBD17A6NE02 478 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 PGCP20142 388 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 PRPS1L1P21108 318 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 CAMK2BQ13554 666 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 MED27Q6P2C8 311 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 MRPL10Q7Z7H8 261 aaKnown RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 GRAMD2AQ8IUY3 354 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 FNDC9Q8TBE3 224 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 CANT1Q8WVQ1 401 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 C11orf84Q9BUA3 381 aaPredicted RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 ELOVL4Q9GZR5 314 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 LIN28AQ9H9Z2 209 aaKnown RBP8.44□□□□□ -1.06
LIG3-202ENST00000378526 LGR6Q9HBX8 967 aa8.44□□□□□ -1.06
LIG3-202ENST00000378526 ZNHIT2Q9UHR6 403 aa8.44□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms