RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 ALG5Q9Y673 324 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 MYH11P35749 1972 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 AHSA1O95433 338 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 SOD2P04179 222 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 FSHRP23945 695 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 DCKP27707 260 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 ARSDP51689 593 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 HNRNPA0Q13151 305 aaKnown RBP11□□□□□ -0.65
PTPRF-203ENST00000372407 THAP6Q8TBB0 222 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF431Q8TF32 576 aaPredicted RBP11□□□□□ -0.65
PTPRF-203ENST00000372407 THEM6Q8WUY1 208 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 PRR11Q96HE9 360 aaPredicted RBP11□□□□□ -0.65
PTPRF-203ENST00000372407 CNOT11Q9UKZ1 510 aaKnown RBP11□□□□□ -0.65
PTPRF-203ENST00000372407 TMEM98Q9Y2Y6 226 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 SMIM30A4D0T7 59 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 HNF1BP35680 557 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 CLDN8P56748 225 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 GALNT1Q10472 559 aaPredicted RBP11□□□□□ -0.65
PTPRF-203ENST00000372407 NPRL3Q12980 569 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 GPM6BQ13491 265 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 SMU1Q2TAY7 513 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF800Q2TB10 664 aaPredicted RBP eCLIP11□□□□□ -0.655e-8■■□□□ 12.6
PTPRF-203ENST00000372407 ZNF280BQ86YH2 543 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 KRTCAP2Q8N6L1 136 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 OR51G2Q8NGK0 314 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 SHKBP1Q8TBC3 707 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 PHOSPHO1Q8TCT1 267 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 HMGB4Q8WW32 186 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 ABI3Q9P2A4 366 aa11□□□□□ -0.65
PTPRF-203ENST00000372407 STOX2Q9P2F5 926 aaPredicted RBP11□□□□□ -0.65
PTPRF-203ENST00000372407 A0A0G2JPF8 293 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 HNRNPCL3B7ZW38 293 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 LEFTY2O00292 366 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 TPD52L2O43399 206 aaKnown RBP10.99□□□□□ -0.65
PTPRF-203ENST00000372407 B4GALT2O60909 372 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 GALTP07902 379 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 MPC1LP0DKB6 136 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 HNRNPCL4P0DMR1 293 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 DEFA5Q01523 94 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 MEF2AQ02078 507 aaPredicted RBP10.99□□□□□ -0.65
PTPRF-203ENST00000372407 SCGB2B2Q4G0G5 96 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 LCN8Q6JVE9 175 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 DPY19L3Q6ZPD9 716 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 SLC29A4Q7RTT9 530 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 SPERTQ8NA61 448 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 KDM1BQ8NB78 822 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 PSD4Q8NDX1 1056 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 BBS10Q8TAM1 723 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 IRF7Q92985 503 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 MOAP1Q96BY2 351 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 LRIG1Q96JA1 1093 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 TTYH2Q9BSA4 534 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 IRF2BPLQ9H1B7 796 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 SEC61A2Q9H9S3 476 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 SMOXQ9NWM0 555 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 RDH8Q9NYR8 311 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF69Q9UC07 566 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 MYO10Q9HD67 2058 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 IGKV6-21A0A0C4DH24 114 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 GLOD5A6NK44 160 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 BLOC1S5-TXNDC5H3BN57 136 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 FAAHO00519 579 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 TSPAN6O43657 245 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 GJB5O95377 273 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 PDYNP01213 254 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 HTR1AP08908 422 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 HOXD8P13378 290 aaPredicted RBP10.99□□□□□ -0.65
PTPRF-203ENST00000372407 HMGCLP35914 325 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 PGGT1BP53609 377 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 RPL19P84098 196 aaKnown RBP10.99□□□□□ -0.65
PTPRF-203ENST00000372407 PIGGQ5H8A4 983 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 PSAPL1Q6NUJ1 521 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 CHERPQ8IWX8 916 aaKnown RBP10.99□□□□□ -0.65
PTPRF-203ENST00000372407 SCML4Q8N228 414 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 OR4K14Q8NGD5 310 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 OR52B6Q8NGF0 335 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 OR2L8Q8NGY9 312 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 NEIL3Q8TAT5 605 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 GNPDA2Q8TDQ7 276 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 CREB3L1Q96BA8 519 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 MTMR10Q9NXD2 777 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 ERVK-18Q9QC07 812 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 LIPT1Q9Y234 373 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 PCDHB14Q9Y5E9 798 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 PCDHGA2Q9Y5H1 932 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 GABBR2O75899 941 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 JUPP14923 745 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 FDXRP22570 491 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 SLC6A9P48067 706 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 LSAMPQ13449 338 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 SPHARQ15513 63 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 ZNF423Q2M1K9 1284 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 RANBP10Q6VN20 620 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 TMED4Q7Z7H5 227 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 GID4Q8IVV7 300 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 PIP5K1AQ99755 562 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 GNG8Q9UK08 70 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 IFT52Q9Y366 437 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 BRWD3Q6RI45 1802 aa10.99□□□□□ -0.65
PTPRF-203ENST00000372407 SH3PXD2BA1X283 911 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 63.1 ms